Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.1e-119 434.1 390 100.0
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 7.1e-106 388.3 190 96.8
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 2.5e-98 363.2 189 88.4
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 2.3e-96 356.7 189 86.8
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 8.7e-96 354.8 210 84.3
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.9e-95 353.6 190 87.9
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 4.3e-95 352.4 190 87.4
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 7.4e-95 351.7 200 82.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 7.4e-95 351.7 190 85.8
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.3e-94 350.9 190 85.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.3e-94 350.9 190 85.8
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 2.1e-94 350.1 190 84.2
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 2.8e-94 349.7 189 85.7
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 3.7e-94 349.4 190 85.8
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 4.8e-94 349.0 190 83.7
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 4.8e-94 349.0 190 84.7
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 4.8e-94 349.0 189 85.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 6.3e-94 348.6 190 84.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 6.3e-94 348.6 190 86.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 6.3e-94 348.6 190 84.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 8.2e-94 348.2 190 85.8
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.4e-93 347.4 190 84.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 1.4e-93 347.4 190 85.8
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.4e-93 347.4 190 85.3
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.8e-93 347.1 189 86.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.4e-93 346.7 190 83.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 2.4e-93 346.7 190 84.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.4e-93 346.7 190 84.2
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.4e-93 346.7 190 84.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.4e-93 346.7 190 84.2
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 83.7
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 84.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 84.7
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 3.1e-93 346.3 189 84.7
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 83.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 84.2
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 4.1e-93 345.9 190 83.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 4.1e-93 345.9 190 83.7
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 4.1e-93 345.9 190 84.7
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 5.3e-93 345.5 189 85.7
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 5.3e-93 345.5 190 84.2
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 5.3e-93 345.5 190 83.7
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 6.9e-93 345.1 190 84.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 6.9e-93 345.1 190 84.2
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 9.0e-93 344.7 190 84.2
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 9.0e-93 344.7 190 85.3
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 9.0e-93 344.7 190 83.7
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 83.7
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.2e-92 344.4 209 78.5
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 83.2
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 83.7
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 82.6
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.5e-92 344.0 190 84.7
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.5e-92 344.0 200 80.5
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.5e-92 344.0 200 80.5
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.0e-92 343.6 190 84.2
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.0e-92 343.6 188 83.5
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 2.0e-92 343.6 190 83.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 2.0e-92 343.6 190 83.7
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 83.2
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 83.2
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 83.2
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 83.2
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 83.2
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 84.7
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 84.7
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 82.6
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.6e-92 343.2 189 83.1
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.6e-92 343.2 189 83.1
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.6e-92 343.2 209 76.6
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 2.6e-92 343.2 190 84.2
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.4e-92 342.8 190 82.1
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 4.5e-92 342.4 190 83.2
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 4.5e-92 342.4 190 83.2
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 4.5e-92 342.4 190 82.1
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 4.5e-92 342.4 188 83.5
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 5.9e-92 342.0 189 84.1
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 7.6e-92 341.7 190 84.2
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.0e-91 341.3 190 81.6
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-91 341.3 190 81.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.2e-91 340.1 190 83.7
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.2e-91 340.1 190 84.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.8e-91 339.3 190 82.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.8e-91 339.3 190 82.6
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 3.8e-91 339.3 190 82.6
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 5.0e-91 339.0 190 81.6
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 5.0e-91 339.0 212 74.5
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 8.4e-91 338.2 190 82.1
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 8.4e-91 338.2 209 80.4
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.4e-90 337.4 190 80.5
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.5e-90 336.7 208 76.0
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 4.2e-90 335.9 190 82.6
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 7.2e-90 335.1 190 82.1
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 7.2e-90 335.1 190 82.1
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.6e-89 332.4 204 77.0
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 2.3e-88 330.1 213 74.2
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 6.7e-88 328.6 189 79.9
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 8.7e-88 328.2 197 79.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.5e-87 327.4 190 80.5
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.8e-86 323.2 239 67.8
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.8e-86 323.2 190 78.9
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.7e-86 322.8 211 73.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.1e-85 319.7 200 75.5
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.1e-85 319.3 242 66.5
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 6.9e-85 318.5 190 79.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 9.0e-85 318.2 218 71.1
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.2e-84 317.8 190 78.4
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.3e-83 314.3 167 87.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 6.5e-83 312.0 208 75.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.2e-81 307.8 266 59.8
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 8.8e-80 301.6 176 80.1
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.8e-78 296.6 200 71.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 9.1e-77 291.6 190 72.1
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 5.9e-76 288.9 155 86.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.1e-73 278.9 155 81.3
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.0e-72 278.1 190 73.7
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 7.4e-71 271.9 190 63.7
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 6.1e-65 252.3 200 65.5
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 3.6e-57 226.5 185 56.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.0e-56 223.4 184 57.6
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 9.1e-53 211.8 212 51.9
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.4e-45 188.0 97 88.7
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.7e-43 181.0 139 64.7
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.1e-41 174.1 94 83.0
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.4e-37 160.6 116 67.2
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.6e-36 157.9 93 76.3
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 7.3e-26 122.5 90 65.6
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.4e-23 113.2 70 72.9
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.4e-23 113.2 70 72.9
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 4.3e-18 96.7 53 83.0
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 3.8e-14 83.6 51 74.5
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 5.4e-13 79.7 53 62.3
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.3e-11 74.3 77 53.2
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 2.8e-09 67.4 42 71.4


User provided reference genes

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