Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 2.7e-166 588.6 289 100.0
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 3.8e-80 302.4 161 91.3
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 2.0e-60 236.9 161 72.0
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 3.4e-44 183.0 92 94.6
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 2.2e-43 180.3 163 54.0
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 1.4e-42 177.6 153 57.5
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 3.2e-42 176.4 148 56.8
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 5.4e-42 175.6 155 54.8
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 5.4e-42 175.6 153 55.6
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 5.4e-42 175.6 150 55.3
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 7.0e-42 175.3 181 51.9
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 1.6e-41 174.1 153 56.2
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 2.7e-41 173.3 150 55.3
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 4.5e-41 172.6 150 54.7
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 5.9e-41 172.2 150 55.3
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 5.9e-41 172.2 163 52.1
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 7.8e-41 171.8 150 56.0
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 1.7e-40 170.6 156 52.6
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 2.9e-40 169.9 150 54.0
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 2.9e-40 169.9 145 56.6
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 3.9e-40 169.5 151 54.3
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 6.6e-40 168.7 153 53.6
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 8.6e-40 168.3 145 55.9
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 1.1e-39 167.9 150 52.0
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 3.3e-39 166.4 154 53.2
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 3.3e-39 166.4 150 55.3
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 4.3e-39 166.0 150 53.3
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 5.6e-39 165.6 148 54.1
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 5.6e-39 165.6 150 52.7
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 7.3e-39 165.2 150 51.3
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 7.3e-39 165.2 150 55.3
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 9.5e-39 164.9 219 43.4
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 1.2e-38 164.5 149 55.0
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 1.2e-38 164.5 149 52.3
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 1.2e-38 164.5 148 53.4
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 1.6e-38 164.1 148 53.4
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 2.8e-38 163.3 164 51.8
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 3.6e-38 162.9 162 51.9
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 4.7e-38 162.5 155 51.6
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.4e-37 161.0 164 51.2
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 1.4e-37 161.0 152 54.6
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 1.4e-37 161.0 150 54.0
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.8e-37 160.6 162 50.6
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.8e-37 160.6 162 50.6
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 1.8e-37 160.6 150 51.3
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 3.1e-37 159.8 155 51.6
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 3.1e-37 159.8 148 52.7
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 4.0e-37 159.5 150 51.3
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 4.0e-37 159.5 152 51.3
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.0e-37 159.5 152 51.3
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 4.0e-37 159.5 150 51.3
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 5.2e-37 159.1 160 49.4
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 8.9e-37 158.3 145 53.1
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 1.2e-36 157.9 146 54.1
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.5e-36 157.5 241 39.8
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.5e-36 157.5 151 53.0
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 3.4e-36 156.4 144 52.8
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 3.4e-36 156.4 148 52.0
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 3.4e-36 156.4 151 51.0
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 4.4e-36 156.0 166 45.8
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 4.4e-36 156.0 166 45.8
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 4.4e-36 156.0 149 52.3
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 5.8e-36 155.6 168 45.8
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 5.8e-36 155.6 150 50.7
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 5.8e-36 155.6 145 52.4
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 9.8e-36 154.8 150 50.7
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.3e-35 154.5 162 49.4
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 1.3e-35 154.5 150 50.7
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 1.7e-35 154.1 164 50.0
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 1.7e-35 154.1 149 51.7
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 1.7e-35 154.1 151 51.7
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 1.7e-35 154.1 151 51.7
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.2e-35 153.7 162 49.4
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 2.9e-35 153.3 156 50.6
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 2.9e-35 153.3 156 49.4
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 2.9e-35 153.3 150 50.7
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 2.9e-35 153.3 148 52.0
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 4.9e-35 152.5 151 51.0
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 8.3e-35 151.8 161 48.4
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 1.4e-34 151.0 155 47.7
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 2.4e-34 150.2 164 48.2
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 4.1e-34 149.4 149 52.3
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 5.4e-34 149.1 158 48.7
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 7.0e-34 148.7 149 48.3
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 9.2e-34 148.3 156 50.6
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 1.2e-33 147.9 170 43.5
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 1.2e-33 147.9 153 51.0
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 1.2e-33 147.9 159 48.4
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 2.0e-33 147.1 154 50.6
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 2.7e-33 146.7 152 49.3
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 3.5e-33 146.4 141 50.4
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 7.8e-33 145.2 206 40.8
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 3.0e-32 143.3 148 49.3
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 8.6e-32 141.7 145 50.3
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 8.6e-32 141.7 145 50.3
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 1.1e-31 141.4 153 45.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.5e-31 140.2 156 49.4
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 4.7e-30 136.0 145 49.0
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 6.2e-30 135.6 145 49.0
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 1.8e-29 134.0 145 48.3
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 2.0e-28 130.6 131 48.9
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 5.8e-28 129.0 119 52.1
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 3.7e-27 126.3 147 46.3
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 7.8e-25 118.6 74 71.6
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 3.0e-24 116.7 143 46.9
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 1.5e-23 114.4 75 66.7
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 7.3e-23 112.1 156 39.7
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 7.6e-20 102.1 73 60.3
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 1.7e-19 100.9 73 60.3
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 5.4e-18 95.9 102 45.1
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 1.1e-15 88.2 100 49.0
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 5.6e-15 85.9 58 72.4
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 1.5e-12 77.8 74 54.1
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 3.8e-11 73.2 108 38.0
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 5.4e-10 69.3 74 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 3.5e-09 66.6 75 46.7
Ca_11766_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 1.6e-06 57.8 41 73.2


User provided reference genes

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