Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086430 Zea mays HOM05D000331 ORTHO05D012198 5.1e-57 224.2 111 100.0
Zm00001eb023630 Zea mays HOM05D039165 ORTHO05D012198 1.9e-16 89.4 52 82.7
Zm00001eb086420 Zea mays HOM05D000331 ORTHO05D012198 1.3e-15 86.7 55 80.0
Zm00001eb136670 Zea mays HOM05D039165 ORTHO05D012198 6.3e-15 84.3 52 78.8
Zm00001eb136660 Zea mays HOM05D000331 ORTHO05D012198 1.1e-14 83.6 52 78.8
Zm00001eb175530 Zea mays HOM05D000331 ORTHO05D012198 1.8e-14 82.8 76 59.2
Zm00001eb253990 Zea mays HOM05D000331 ORTHO05D003399 2.6e-13 79.0 63 68.3
Os02g0738900 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D003399 2.2e-12 75.9 69 60.9
Zm00001eb280130 Zea mays HOM05D000331 ORTHO05D003399 5.0e-12 74.7 69 59.4
Zm00001eb371760 Zea mays HOM05D000331 ORTHO05D003399 4.2e-11 71.6 69 58.0
arahy.Tifrunner.gnm1.ann1.07YC75 Arachis hypogaea HOM05D000331 ORTHO05D003399 4.6e-10 68.2 69 52.2
arahy.Tifrunner.gnm1.ann1.19AV4I Arachis hypogaea HOM05D000331 ORTHO05D003399 4.6e-10 68.2 90 48.9
arahy.Tifrunner.gnm1.ann1.1TT2GW Arachis hypogaea HOM05D000331 ORTHO05D003399 4.6e-10 68.2 90 48.9
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 4.6e-10 68.2 69 52.2
THA.LOC104799784 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 4.6e-10 68.2 63 57.1
THA.LOC104819889 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 7.9e-10 67.4 63 55.6
Glyma.12G242300 Glycine max HOM05D000331 ORTHO05D003399 1.0e-09 67.0 90 47.8
AL1G21020 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 1.8e-09 66.2 90 46.7
BcaC05g24911 Brassica carinata HOM05D000331 ORTHO05D003399 1.8e-09 66.2 90 46.7
Carub.0001s0968 Capsella rubella HOM05D000331 ORTHO05D003399 1.8e-09 66.2 90 46.7
Sp2g04970 Schrenkiella parvula HOM05D000331 ORTHO05D003399 1.8e-09 66.2 63 55.6
AT1G59610 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 2.3e-09 65.9 63 55.6
BcaC05g24906 Brassica carinata HOM05D000331 ORTHO05D003399 2.3e-09 65.9 90 46.7
C05p08400 Brassica napus HOM05D000331 ORTHO05D003399 2.3e-09 65.9 90 46.7
BolC5t29591H Brassica oleracea HOM05D000331 ORTHO05D003399 2.3e-09 65.9 90 46.7
Carub.0002s0584 Capsella rubella HOM05D000331 ORTHO05D003399 2.3e-09 65.9 63 55.6
Aa31LG1G4650 Aethionema arabicum HOM05D000331 ORTHO05D003399 3.0e-09 65.5 90 46.7
A06p06920 Brassica napus HOM05D000331 ORTHO05D003399 3.0e-09 65.5 63 54.0
BraA06t23908Z Brassica rapa HOM05D000331 ORTHO05D003399 3.0e-09 65.5 63 54.0
CARHR010390 Cardamine hirsuta HOM05D000331 ORTHO05D003399 3.0e-09 65.5 90 46.7
Thhalv10006739m.g Eutrema salsugineum HOM05D000331 ORTHO05D003399 3.0e-09 65.5 63 54.0
Sp1g08880 Schrenkiella parvula HOM05D000331 ORTHO05D003399 3.0e-09 65.5 90 45.6
AT1G10290 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 3.9e-09 65.1 90 45.6
BcaC02g10645 Brassica carinata HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
BcaC06g31789 Brassica carinata HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
A01p28710 Brassica napus HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
C01p36360 Brassica napus HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
C04p26160 Brassica napus HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
BolC1t03594H Brassica oleracea HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
BolC4t24188H Brassica oleracea HOM05D000331 ORTHO05D003399 3.9e-09 65.1 63 54.0
AL2G17450 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 5.1e-09 64.7 63 54.0
BcaB08g37343 Brassica carinata HOM05D000331 ORTHO05D003399 5.1e-09 64.7 90 45.6
CARHR283780 Cardamine hirsuta HOM05D000331 ORTHO05D003399 5.1e-09 64.7 63 54.0
Lalb_Chr01g0008191 Lupinus albus HOM05D000331 ORTHO05D003399 5.1e-09 64.7 69 52.2
Lalb_Chr03g0033801 Lupinus albus HOM05D000331 ORTHO05D003399 5.1e-09 64.7 69 52.2
Lalb_Chr19g0131871 Lupinus albus HOM05D000331 ORTHO05D003399 5.1e-09 64.7 69 52.2
Aa31LG2G10540 Aethionema arabicum HOM05D000331 ORTHO05D003399 8.8e-09 63.9 63 52.4
A03p66200 Brassica napus HOM05D000331 ORTHO05D003399 8.8e-09 63.9 63 52.4
Psat7g226360 Pisum sativum HOM05D000331 ORTHO05D003399 1.5e-08 63.2 90 45.6
C08p13560 Brassica napus HOM05D000331 ORTHO05D003399 1.9e-08 62.8 90 44.4
BolC8t48991H Brassica oleracea HOM05D000331 ORTHO05D003399 1.9e-08 62.8 90 44.4
BcaC07g38538 Brassica carinata HOM05D000331 ORTHO05D003399 2.5e-08 62.4 90 44.4
A09p65130 Brassica napus HOM05D000331 ORTHO05D003399 2.5e-08 62.4 63 49.2
BraA09t41856Z Brassica rapa HOM05D000331 ORTHO05D003399 2.5e-08 62.4 63 49.2
BcaB04g20217 Brassica carinata HOM05D000331 ORTHO05D003399 3.3e-08 62.0 63 52.4
BraA08t35319Z Brassica rapa HOM05D000331 ORTHO05D003399 3.3e-08 62.0 63 50.8
Cpa.g.sc113.8 Carica papaya HOM05D000331 ORTHO05D003399 3.3e-08 62.0 91 45.1
TAR381G0865 Trochodendron aralioides HOM05D000331 ORTHO05D003399 3.3e-08 62.0 88 45.5
TAR628G0110 Trochodendron aralioides HOM05D000331 ORTHO05D003399 3.3e-08 62.0 65 52.3
Medtr4g030140 Medicago truncatula HOM05D000331 ORTHO05D003399 4.3e-08 61.6 67 55.2
ClCG11G008360 Citrullus lanatus HOM05D000331 ORTHO05D003399 5.7e-08 61.2 74 52.7
MELO3C008098.2 Cucumis melo HOM05D000331 ORTHO05D003399 5.7e-08 61.2 74 52.7
CsaV3_2G033270 Cucumis sativus L. HOM05D000331 ORTHO05D003399 5.7e-08 61.2 74 52.7
Sed0002348 Sechium edule HOM05D000331 ORTHO05D003399 5.7e-08 61.2 70 52.9
TPR.G34136 Trifolium pratense HOM05D000331 ORTHO05D003399 5.7e-08 61.2 69 50.7
TAR376G0360 Trochodendron aralioides HOM05D000331 ORTHO05D003399 5.7e-08 61.2 80 47.5
Aqoxy6G00052 Aquilegia oxysepala HOM05D000331 ORTHO05D003399 9.7e-08 60.5 67 47.8
Ca_02691_v3 Cicer arietinum L. HOM05D000331 ORTHO05D003399 9.7e-08 60.5 93 46.2
Thhalv10023247m.g Eutrema salsugineum HOM05D000331 ORTHO05D003399 9.7e-08 60.5 63 52.4
Gohir.A08G230400 Gossypium hirsutum HOM05D000331 ORTHO05D003399 9.7e-08 60.5 69 46.4
Gohir.D08G250800 Gossypium hirsutum HOM05D000331 ORTHO05D003399 9.7e-08 60.5 69 46.4
Gorai.004G267500 Gossypium raimondii HOM05D000331 ORTHO05D003399 9.7e-08 60.5 69 46.4
Duzib116G0816 Durio zibethinus HOM05D000331 ORTHO05D003399 1.3e-07 60.1 69 46.4
Lj3g0021427 Lotus japonicus HOM05D000331 ORTHO05D003399 1.3e-07 60.1 79 48.1
Oeu017735.1 Olea europaea HOM05D000331 ORTHO05D003399 1.3e-07 60.1 55 56.4
Sed0016992 Sechium edule HOM05D000331 ORTHO05D003399 1.3e-07 60.1 69 50.7
HPP92_017281 Vanilla planifolia HOM05D000331 ORTHO05D003399 1.7e-07 59.7 85 45.9
Glyma.09G002100 Glycine max HOM05D000331 ORTHO05D003399 2.2e-07 59.3 64 54.7
GSVIVG01023155001 Vitis vinifera HOM05D000331 ORTHO05D003399 2.2e-07 59.3 92 46.7
Haze_13975 Corylus avellana HOM05D000331 ORTHO05D003399 2.8e-07 58.9 59 54.2
PSO210G0328 Papaver somniferum HOM05D000331 ORTHO05D003399 2.8e-07 58.9 58 55.2
PSO447G0026 Papaver somniferum HOM05D000331 ORTHO05D003399 2.8e-07 58.9 58 55.2
THA.LOC104823673 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 2.8e-07 58.9 69 47.8
Atru.chr13.2541 Acer truncatum HOM05D000331 ORTHO05D003399 3.7e-07 58.5 79 48.1
CiPaw.04G009000 Carya illinoinensis HOM05D000331 ORTHO05D003399 3.7e-07 58.5 74 48.6
Peaxi162Scf00011g01726 Petunia axillaris HOM05D000331 ORTHO05D003399 3.7e-07 58.5 56 58.9
Phvul.011G215900 Phaseolus vulgaris HOM05D000331 ORTHO05D003399 3.7e-07 58.5 94 43.6
Potri.019G068700 Populus trichocarpa HOM05D000331 ORTHO05D003399 3.7e-07 58.5 57 49.1
VMungo1127G0260 Vigna mungo HOM05D000331 ORTHO05D003399 3.7e-07 58.5 80 46.2
A08p34060 Brassica napus HOM05D000331 ORTHO05D003399 4.8e-07 58.2 91 44.0
AUR62032458 Chenopodium quinoa HOM05D000331 ORTHO05D003399 4.8e-07 58.2 73 49.3
AUR62041957 Chenopodium quinoa HOM05D000331 ORTHO05D003399 4.8e-07 58.2 73 49.3
MD05G1001600 Malus domestica HOM05D000331 ORTHO05D003399 4.8e-07 58.2 70 48.6
Nitab4.5_0001057g0100 Nicotiana tabacum HOM05D000331 ORTHO05D003399 4.8e-07 58.2 56 58.9
PGR142G0664 Punica granatum HOM05D000331 ORTHO05D003399 4.8e-07 58.2 58 53.4
Zm00001eb041920 Zea mays HOM05D000331 ORTHO05D003399 4.8e-07 58.2 64 48.4
MD10G1002800 Malus domestica HOM05D000331 ORTHO05D003399 6.3e-07 57.8 70 48.6
Os03g0732200 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D012198 6.3e-07 57.8 51 58.8
TWI18G0696 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 6.3e-07 57.8 59 54.2
EL10Ac6g14004 Beta vulgaris HOM05D000331 ORTHO05D003399 8.2e-07 57.4 71 49.3
CANSAT21G1643 Cannabis sativa HOM05D000331 ORTHO05D003399 8.2e-07 57.4 73 47.9
CsaV3_5G039590 Cucumis sativus L. HOM05D000331 ORTHO05D003399 8.2e-07 57.4 73 46.6
Dinv29625 Davidia involucrata HOM05D000331 ORTHO05D003399 8.2e-07 57.4 45 62.2
Dinv29672 Davidia involucrata HOM05D000331 ORTHO05D003399 8.2e-07 57.4 44 63.6
Lj5A282G68 Lonicera japonica HOM05D000331 ORTHO05D003399 8.2e-07 57.4 56 57.1
PGR042G0765 Punica granatum HOM05D000331 ORTHO05D003399 8.2e-07 57.4 58 53.4
RcHm_v2.0_Chr6g0250411 Rosa chinensis HOM05D000331 ORTHO05D003399 8.2e-07 57.4 58 53.4
Lj4g0009625 Lotus japonicus HOM05D000331 ORTHO05D003399 1.1e-06 57.0 65 47.7
Manes.18G111800 Manihot esculenta HOM05D000331 ORTHO05D003399 1.1e-06 57.0 71 47.9
PSO170G2002 Papaver somniferum HOM05D000331 ORTHO05D003399 1.1e-06 57.0 69 49.3
QL09p001435 Quercus lobata HOM05D000331 ORTHO05D003399 1.1e-06 57.0 56 55.4
Sabra01G0173300 Salix brachista HOM05D000331 ORTHO05D003399 1.1e-06 57.0 61 55.7
Sabra03G0000600 Salix brachista HOM05D000331 ORTHO05D003399 1.1e-06 57.0 68 51.5
Hund15400 Selenicereus undatus HOM05D000331 ORTHO05D003399 1.1e-06 57.0 71 49.3
ATR1159G078 Amborella trichopoda HOM05D000331 ORTHO05D003399 1.4e-06 56.6 67 52.2
CSS0005378 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D003399 1.4e-06 56.6 55 54.5
CiPaw.03G013200 Carya illinoinensis HOM05D000331 ORTHO05D003399 1.4e-06 56.6 56 55.4
CDE07G0866 Ceratophyllum demersum HOM05D000331 ORTHO05D003399 1.4e-06 56.6 53 56.6
CDE07G1913 Ceratophyllum demersum HOM05D000331 ORTHO05D003399 1.4e-06 56.6 61 52.5
DCAR_003284 Daucus carota HOM05D000331 ORTHO05D003399 1.4e-06 56.6 56 55.4
FvH4_2g00460 Fragaria vesca HOM05D000331 ORTHO05D003399 1.4e-06 56.6 79 45.6
Gohir.A10G003500 Gossypium hirsutum HOM05D000331 ORTHO05D003399 1.4e-06 56.6 68 48.5
Gohir.D10G003500 Gossypium hirsutum HOM05D000331 ORTHO05D003399 1.4e-06 56.6 68 48.5
Gorai.011G003900 Gossypium raimondii HOM05D000331 ORTHO05D003399 1.4e-06 56.6 68 48.5
Prupe.8G004400 Prunus persica HOM05D000331 ORTHO05D003399 1.4e-06 56.6 86 44.2
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.4e-06 56.6 55 52.7
COL.COLO4_25129 Corchorus olitorius HOM05D000331 ORTHO05D003399 1.8e-06 56.2 65 49.2
Manes.02G204900 Manihot esculenta HOM05D000331 ORTHO05D003399 2.4e-06 55.8 70 48.6
Sed0017899 Sechium edule HOM05D000331 ORTHO05D003399 2.4e-06 55.8 73 46.6
CSS0026537 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D003399 3.1e-06 55.5 53 58.5
Cc10_g09200 Coffea canephora HOM05D000331 ORTHO05D003399 3.1e-06 55.5 45 57.8
Haze_09996 Corylus avellana HOM05D000331 ORTHO05D003399 3.1e-06 55.5 69 43.5
Dinv22132 Davidia involucrata HOM05D000331 ORTHO05D003399 3.1e-06 55.5 58 53.4
Eucgr.I02791 Eucalyptus grandis HOM05D000331 ORTHO05D003399 3.1e-06 55.5 71 43.7
Solyc01g103130.2 Solanum lycopersicum HOM05D000331 ORTHO05D003399 3.1e-06 55.5 56 55.4
Sopen01g045540 Solanum pennellii HOM05D000331 ORTHO05D003399 3.1e-06 55.5 56 55.4
CAN.G855.44 Capsicum annuum HOM05D000331 ORTHO05D003399 4.1e-06 55.1 56 55.4
Duzib235G1370 Durio zibethinus HOM05D000331 ORTHO05D003399 4.1e-06 55.1 70 45.7
Manes.07G028400 Manihot esculenta HOM05D000331 ORTHO05D003399 4.1e-06 55.1 69 49.3
Os08g0425100 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D003399 4.1e-06 55.1 69 49.3
TWI75G0938 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 4.1e-06 55.1 81 46.9
Duzib192G0786 Durio zibethinus HOM05D000331 ORTHO05D003399 5.3e-06 54.7 68 48.5
Migut.C01350 Erythranthe guttata HOM05D000331 ORTHO05D003399 5.3e-06 54.7 56 55.4
Thecc.06G000800 Theobroma cacao HOM05D000331 ORTHO05D003399 5.3e-06 54.7 58 50.0
COL.COLO4_26826 Corchorus olitorius HOM05D000331 ORTHO05D003399 6.9e-06 54.3 58 50.0
TWI12G0042 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 6.9e-06 54.3 59 49.2
DCAR_031993 Daucus carota HOM05D000331 ORTHO05D003399 9.1e-06 53.9 51 60.8
Nitab4.5_0001359g0030 Nicotiana tabacum HOM05D000331 ORTHO05D003399 9.1e-06 53.9 45 57.8
PSO017G5053 Papaver somniferum HOM05D000331 ORTHO05D003399 9.1e-06 53.9 70 47.1


User provided reference genes

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