Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086090 Zea mays HOM05D001026 ORTHO05D022183 1.7e-44 182.2 87 100.0
Zm00001eb237800 Zea mays HOM05D001026 ORTHO05D022183 5.0e-44 180.6 87 98.9
Zm00001eb415340 Zea mays HOM05D001026 ORTHO05D022183 5.0e-44 180.6 87 98.9
Zm00001eb174590 Zea mays HOM05D001026 ORTHO05D003027 1.1e-43 179.5 87 98.9
Zm00001eb199510 Zea mays HOM05D001026 ORTHO05D022183 2.3e-41 171.8 87 95.4
Os08g0520900 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D003027 9.5e-35 149.8 84 83.3
HanXRQChr05g0136381 Helianthus annuus HOM05D001026 ORTHO05D003027 7.8e-29 130.2 86 64.0
Nn8g41047 Nelumbo nucifera HOM05D001026 ORTHO05D003027 7.8e-29 130.2 83 69.9
Rhsim03G0268200 Rhododendron simsii HOM05D001026 ORTHO05D003027 7.8e-29 130.2 83 67.5
Aqoxy7G02694 Aquilegia oxysepala HOM05D001026 ORTHO05D003027 1.7e-28 129.0 83 67.5
Migut.J00824 Erythranthe guttata HOM05D001026 ORTHO05D003027 1.7e-28 129.0 85 63.5
Hund09047 Selenicereus undatus HOM05D001026 ORTHO05D003027 2.3e-28 128.6 84 65.5
AUR62033250 Chenopodium quinoa HOM05D001026 ORTHO05D003027 3.0e-28 128.3 86 66.3
Oeu000973.1 Olea europaea HOM05D001026 ORTHO05D003027 3.0e-28 128.3 83 63.9
QL11p009474 Quercus lobata HOM05D001026 ORTHO05D003027 3.0e-28 128.3 83 68.7
Ca_17409_v3 Cicer arietinum L. HOM05D001026 ORTHO05D003027 5.1e-28 127.5 86 62.8
vmacro22289 Vaccinium macrocarpon HOM05D001026 ORTHO05D003027 6.6e-28 127.1 83 66.3
CiPaw.15G154500 Carya illinoinensis HOM05D001026 ORTHO05D003027 8.6e-28 126.7 83 66.3
COL.COLO4_23451 Corchorus olitorius HOM05D001026 ORTHO05D003027 8.6e-28 126.7 83 65.1
Lj5A709G9 Lonicera japonica HOM05D001026 ORTHO05D003027 8.6e-28 126.7 83 63.9
ATR0626G365 Amborella trichopoda HOM05D001026 ORTHO05D003027 1.1e-27 126.3 80 68.8
Psat7g021960 Pisum sativum HOM05D001026 ORTHO05D003027 1.1e-27 126.3 84 65.5
TAR625G0921 Trochodendron aralioides HOM05D001026 ORTHO05D003027 1.1e-27 126.3 83 66.3
ECA236G4714 Erigeron canadensis HOM05D001026 ORTHO05D003027 1.5e-27 125.9 86 61.6
Hma1.2p1_0314F.1_g121900 Hydrangea macrophylla HOM05D001026 ORTHO05D003027 1.5e-27 125.9 86 59.3
Lj4g0023046 Lotus japonicus HOM05D001026 ORTHO05D003027 1.5e-27 125.9 85 65.9
Gohir.D04G007100 Gossypium hirsutum HOM05D001026 ORTHO05D003027 1.9e-27 125.6 83 63.9
Gorai.012G008800 Gossypium raimondii HOM05D001026 ORTHO05D003027 1.9e-27 125.6 83 63.9
Nitab4.5_0000053g0170 Nicotiana tabacum HOM05D001026 ORTHO05D003027 3.3e-27 124.8 83 66.3
TPR.G25465 Trifolium pratense HOM05D001026 ORTHO05D003027 3.3e-27 124.8 86 62.8
EL10Ac8g18322 Beta vulgaris HOM05D001026 ORTHO05D003027 4.3e-27 124.4 86 60.5
Eucgr.C02189 Eucalyptus grandis HOM05D001026 ORTHO05D003027 4.3e-27 124.4 85 67.1
Sed0017236 Sechium edule HOM05D001026 ORTHO05D003027 4.3e-27 124.4 83 65.1
MSTRG.5953 Avicennia marina HOM05D001026 ORTHO05D003027 5.6e-27 124.0 83 66.3
AUR62021335 Chenopodium quinoa HOM05D001026 ORTHO05D003027 5.6e-27 124.0 86 64.0
Medtr8g101490 Medicago truncatula HOM05D001026 ORTHO05D003027 5.6e-27 124.0 86 62.8
Dinv26458 Davidia involucrata HOM05D001026 ORTHO05D003027 7.3e-27 123.6 83 65.1
Ah.09g230140 Amaranthus hybridus HOM05D001026 ORTHO05D003027 9.5e-27 123.2 86 59.3
CANSAT80G2343 Cannabis sativa HOM05D001026 ORTHO05D003027 9.5e-27 123.2 85 62.4
Cc10_g11550 Coffea canephora HOM05D001026 ORTHO05D003027 9.5e-27 123.2 85 61.2
MELO3C017391.2 Cucumis melo HOM05D001026 ORTHO05D003027 9.5e-27 123.2 83 61.4
PGR044G2410 Punica granatum HOM05D001026 ORTHO05D003027 9.5e-27 123.2 83 66.3
Sabra06G0052700 Salix brachista HOM05D001026 ORTHO05D003027 9.5e-27 123.2 83 63.9
SalBow6G3178 Salvia bowleyana HOM05D001026 ORTHO05D003027 9.5e-27 123.2 86 62.8
VMungo0251G0311 Vigna mungo HOM05D001026 ORTHO05D003027 9.5e-27 123.2 85 62.4
SGA_v2.0_scaffold31G12733 Striga asiatica HOM05D001026 ORTHO05D003027 1.6e-26 122.5 83 61.4
Manes.06G054000 Manihot esculenta HOM05D001026 ORTHO05D003027 2.1e-26 122.1 83 65.1
RcHm_v2.0_Chr4g0398221 Rosa chinensis HOM05D001026 ORTHO05D003027 2.1e-26 122.1 82 64.6
TWI32G1029 Tripterygium wilfordii HOM05D001026 ORTHO05D003027 2.1e-26 122.1 86 64.0
arahy.Tifrunner.gnm1.ann1.TNRR0X Arachis hypogaea HOM05D001026 ORTHO05D003027 2.8e-26 121.7 85 62.4
DCAR_010517 Daucus carota HOM05D001026 ORTHO05D003027 2.8e-26 121.7 83 67.5
Potri.006G070800 Populus trichocarpa HOM05D001026 ORTHO05D003027 2.8e-26 121.7 83 62.7
PGSC0003DMG400020699 Solanum tuberosum HOM05D001026 ORTHO05D003027 2.8e-26 121.7 80 65.0
CsaV3_1G032200 Cucumis sativus L. HOM05D001026 ORTHO05D003027 3.6e-26 121.3 83 61.4
MBI16_g18205_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D003027 3.6e-26 121.3 85 61.2
Atru.chr7.979 Acer truncatum HOM05D001026 ORTHO05D003027 4.7e-26 120.9 83 63.9
arahy.Tifrunner.gnm1.ann1.8UPE10 Arachis hypogaea HOM05D001026 ORTHO05D003027 4.7e-26 120.9 85 62.4
Duzib168G0491 Durio zibethinus HOM05D001026 ORTHO05D003027 4.7e-26 120.9 85 63.5
CAN.G2983.1 Capsicum annuum HOM05D001026 ORTHO05D022183 6.2e-26 120.6 82 62.2
CAN.G33.1 Capsicum annuum HOM05D001026 ORTHO05D003027 6.2e-26 120.6 82 62.2
CAN.G33.2 Capsicum annuum HOM05D001026 ORTHO05D003027 6.2e-26 120.6 82 62.2
Sabra18G0112200 Salix brachista HOM05D001026 ORTHO05D003027 6.2e-26 120.6 82 64.6
GSVIVG01035168001 Vitis vinifera HOM05D001026 ORTHO05D003027 6.2e-26 120.6 84 63.1
Peaxi162Scf00889g00224 Petunia axillaris HOM05D001026 ORTHO05D003027 8.1e-26 120.2 83 63.9
Phvul.002G303600 Phaseolus vulgaris HOM05D001026 ORTHO05D003027 8.1e-26 120.2 83 62.7
Cfa020723 Carpinus fangiana HOM05D001026 ORTHO05D003027 1.4e-25 119.4 82 64.6
MD16G1241000 Malus domestica HOM05D001026 ORTHO05D003027 1.4e-25 119.4 84 60.7
unitig_578.g15826 Utricularia gibba HOM05D001026 ORTHO05D003027 1.4e-25 119.4 83 60.2
PSO170G5814 Papaver somniferum HOM05D001026 ORTHO05D003027 1.8e-25 119.0 83 62.7
Lsat_1_v5_gn_8_70320 Lactuca sativa HOM05D001026 ORTHO05D003027 2.3e-25 118.6 88 62.5
Actinidia38514 Actinidia chinensis HOM05D001026 ORTHO05D003027 3.1e-25 118.2 82 62.2
FvH4_4g06440 Fragaria vesca HOM05D001026 ORTHO05D003027 3.1e-25 118.2 82 63.4
FAN12G0904 Fragaria x ananassa HOM05D001026 ORTHO05D003027 3.1e-25 118.2 82 63.4
FAN22G1176 Fragaria x ananassa HOM05D001026 ORTHO05D003027 3.1e-25 118.2 82 63.4
Glyma.08G028400 Glycine max HOM05D001026 ORTHO05D003027 3.1e-25 118.2 85 61.2
Solyc07g014590.4 Solanum lycopersicum HOM05D001026 ORTHO05D003027 3.1e-25 118.2 80 63.8
Sopen07g005470 Solanum pennellii HOM05D001026 ORTHO05D003027 3.1e-25 118.2 80 63.8
SEGI_21844 Sequoiadendron giganteum HOM05D001026 ORTHO05D003027 4.0e-25 117.9 85 62.4
THA.LOC104826981 Tarenaya hassleriana HOM05D001026 ORTHO05D003027 4.0e-25 117.9 82 63.4
Thecc.09G189800 Theobroma cacao HOM05D001026 ORTHO05D003027 4.0e-25 117.9 83 62.7
FAN07G0050 Fragaria x ananassa HOM05D001026 ORTHO05D003027 5.2e-25 117.5 82 63.4
Ciclev10007489m.g Citrus clementina HOM05D001026 ORTHO05D003027 6.8e-25 117.1 83 60.2
Lalb_Chr16g0390891 Lupinus albus HOM05D001026 ORTHO05D003027 6.8e-25 117.1 85 60.0
Potri.018G132500 Populus trichocarpa HOM05D001026 ORTHO05D003027 6.8e-25 117.1 82 64.6
Prupe.1G067700 Prunus persica HOM05D001026 ORTHO05D003027 1.2e-24 116.3 84 59.5
PGSC0003DMG400030253 Solanum tuberosum HOM05D001026 ORTHO05D022183 2.0e-24 115.5 80 60.0
SMO367G0997 Selaginella moellendorffii HOM05D001026 ORTHO05D003027 3.4e-24 114.8 82 62.2
PSO063G6530 Papaver somniferum HOM05D001026 ORTHO05D003027 4.4e-24 114.4 83 60.2
HPP92_010797 Vanilla planifolia HOM05D001026 ORTHO05D003027 5.8e-24 114.0 80 63.8
MD13G1236000 Malus domestica HOM05D001026 ORTHO05D003027 9.9e-24 113.2 82 59.8
AT2G39930 Arabidopsis thaliana HOM05D001026 ORTHO05D003027 2.9e-23 111.7 82 61.0
Aa31LG5G19690 Aethionema arabicum HOM05D001026 ORTHO05D003027 3.7e-23 111.3 83 60.2
CARHR134850 Cardamine hirsuta HOM05D001026 ORTHO05D003027 3.7e-23 111.3 82 59.8
AL4G37510 Arabidopsis lyrata HOM05D001026 ORTHO05D003027 4.9e-23 110.9 82 61.0
Carub.0004s2206 Capsella rubella HOM05D001026 ORTHO05D003027 6.4e-23 110.5 82 61.0
Pp3c14_11860 Physcomitrium patens HOM05D001026 ORTHO05D003027 1.1e-22 109.8 83 59.0
Thhalv10016275m.g Eutrema salsugineum HOM05D001026 ORTHO05D003027 1.9e-22 109.0 82 58.5
A05p06490 Brassica napus HOM05D001026 ORTHO05D003027 2.4e-22 108.6 82 59.8
BraA05t19617Z Brassica rapa HOM05D001026 ORTHO05D003027 2.4e-22 108.6 82 59.8
BcaB02g09070 Brassica carinata HOM05D001026 ORTHO05D003027 5.4e-22 107.5 82 58.5
C04p07570 Brassica napus HOM05D001026 ORTHO05D003027 7.1e-22 107.1 82 58.5
BolC4t22374H Brassica oleracea HOM05D001026 ORTHO05D003027 7.1e-22 107.1 82 58.5
CSS0026477 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D003027 1.6e-21 105.9 78 61.5
ClCG06G013990 Citrullus lanatus HOM05D001026 ORTHO05D003027 1.6e-21 105.9 71 62.0
Mapoly0016s0146 Marchantia polymorpha HOM05D001026 ORTHO05D003027 2.7e-21 105.1 83 54.2
Sp4g22240 Schrenkiella parvula HOM05D001026 ORTHO05D003027 2.7e-21 105.1 80 58.8
Nitab4.5_0008119g0010 Nicotiana tabacum HOM05D001026 ORTHO05D003027 3.9e-20 101.3 66 63.6
CBR_g640 Chara braunii HOM05D001026 ORTHO05D003027 1.9e-19 99.0 84 51.2
Rhsim07G0245000 Rhododendron simsii HOM05D001026 ORTHO05D007252 2.1e-18 95.5 79 51.9
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.2e-15 85.5 62 58.1
Gohir.A05G408400 Gossypium hirsutum HOM05D001026 ORTHO05D003027 4.9e-15 84.3 52 67.3
Actinidia29970 Actinidia chinensis HOM05D001026 ORTHO05D023293 3.2e-14 81.6 58 56.9
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 7.1e-14 80.5 61 57.4
Cre03.g155001 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D003027 7.3e-11 70.5 89 42.7


User provided reference genes

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