Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 0.0e+00 1718.0 917 100.0
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.8e-310 1067.8 879 69.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 9.7e-146 521.9 926 42.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.4e-138 496.5 940 41.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.3e-136 489.6 819 42.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.0e-131 473.8 832 41.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.2e-131 473.0 978 40.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.7e-129 466.8 918 39.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-128 464.5 837 41.2
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.1e-128 463.8 896 39.8
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.0e-126 456.4 898 39.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.1e-125 455.3 838 40.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.5e-125 454.1 881 40.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-125 454.1 835 41.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.2e-125 453.8 875 40.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.0e-123 448.7 808 41.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.3e-123 447.6 820 40.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.5e-122 444.9 816 40.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.4e-122 443.7 904 39.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.5e-122 442.6 852 41.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.8e-122 442.2 903 39.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.3e-121 441.8 883 39.4
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.7e-121 440.3 918 38.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.8e-120 438.0 840 38.8
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.1e-120 435.6 824 39.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.7e-119 434.1 850 39.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-119 434.1 861 39.8
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.7e-119 434.1 852 40.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-119 433.3 859 39.8
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-118 431.8 841 39.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.3e-118 431.0 863 39.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.3e-118 431.0 891 38.5
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.8e-118 430.3 862 39.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.0e-118 429.9 860 40.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.0e-118 429.9 809 40.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.6e-118 429.1 860 39.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.5e-117 428.3 795 40.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.9e-117 427.9 809 38.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.2e-117 426.0 802 39.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.2e-117 426.0 822 39.4
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 7.2e-117 426.0 852 37.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.1e-116 424.5 833 39.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.0e-115 422.2 790 40.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.4e-115 421.8 837 37.8
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 5.2e-115 419.9 902 38.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.2e-114 418.7 812 40.9
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.5e-114 418.3 822 39.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-114 416.8 804 39.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.5e-114 416.0 839 38.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-113 415.2 826 39.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.8e-113 414.1 906 37.6
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-113 414.1 896 38.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.3e-113 412.5 901 37.5
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 8.3e-113 412.5 843 38.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-112 411.4 818 38.4
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.4e-112 409.8 822 39.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.0e-111 407.9 908 36.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.0e-111 407.9 884 36.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-111 407.9 816 38.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.7e-111 407.5 806 39.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 3.5e-111 407.1 889 37.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.0e-110 405.6 811 38.7
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.7e-110 404.8 938 37.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.7e-110 404.8 898 36.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-110 404.4 708 42.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.3e-110 404.4 815 38.5
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.9e-110 404.1 825 38.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.9e-110 404.1 804 38.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 5.0e-110 403.3 781 39.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.6e-110 402.9 783 39.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.6e-110 402.5 865 36.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.9e-109 401.4 850 37.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 5.6e-109 399.8 899 37.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 9.5e-109 399.1 852 36.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.6e-108 398.3 969 35.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.6e-108 397.1 812 37.8
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.7e-108 396.7 885 36.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.1e-108 396.4 902 36.8
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-107 395.2 911 36.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.2e-107 393.3 739 41.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 8.9e-107 392.5 787 40.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.5e-106 391.7 749 37.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.0e-106 391.3 834 37.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.6e-106 391.0 890 37.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 9.8e-106 389.0 732 40.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.2e-105 387.9 827 37.8
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 8.3e-105 386.0 886 36.3
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.4e-104 385.2 867 37.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.2e-104 384.0 806 37.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.4e-104 383.3 722 39.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.6e-103 381.7 563 44.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.7e-103 380.9 582 46.0
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 7.8e-103 379.4 929 38.1
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.3e-102 377.9 802 36.0
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.0e-102 377.5 848 36.6
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 8.6e-102 375.9 842 35.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 8.6e-102 375.9 831 36.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 8.6e-102 375.9 812 36.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-101 375.6 749 39.5
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.3e-101 373.6 887 36.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 5.6e-101 373.2 859 35.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.8e-100 370.9 751 36.4
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-99 369.0 783 38.1
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.4e-99 368.6 772 37.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.4e-99 368.6 844 34.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.3e-99 367.9 772 39.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 8.9e-99 365.9 559 45.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.5e-98 365.2 831 35.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-98 364.4 705 40.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.4e-98 364.0 767 36.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 9.8e-98 362.5 807 35.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.3e-97 362.1 825 36.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.7e-97 360.5 803 35.7
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.7e-97 360.5 897 34.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 6.4e-97 359.8 816 36.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.3e-97 359.4 854 34.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.4e-96 356.7 613 42.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 9.2e-96 355.9 880 34.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.1e-95 354.8 827 35.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.6e-95 353.6 830 35.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-94 352.1 831 35.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.3e-94 352.1 889 34.3
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.7e-94 351.7 866 34.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 3.9e-94 350.5 860 35.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 3.9e-94 350.5 860 35.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.5e-93 345.9 792 36.9
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.6e-92 344.0 820 34.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.2e-92 343.2 822 33.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-91 342.4 826 36.8
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.3e-91 341.3 810 33.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.0e-91 340.5 629 41.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.8e-90 336.7 800 36.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.0e-86 324.3 795 35.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-85 322.0 708 37.1
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.1e-84 318.2 549 40.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.3e-81 308.9 856 33.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.4e-80 304.7 777 35.5
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.7e-78 298.5 830 33.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.6e-78 296.6 740 35.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-77 295.4 837 32.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.1e-75 289.3 805 33.8
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.0e-75 287.3 643 35.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.0e-70 271.2 478 40.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.5e-69 268.9 539 38.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.3e-69 266.5 552 39.1
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.1e-67 262.7 804 32.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.6e-63 247.3 776 32.1
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.0e-59 233.0 632 35.0
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.8e-50 203.8 708 31.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.0e-49 203.0 466 36.3
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.9e-49 201.4 363 39.7
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.3e-46 192.6 444 35.1
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-43 181.0 301 40.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 5.3e-43 180.6 385 39.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.9e-42 177.2 506 33.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.7e-42 176.8 332 38.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.8e-38 165.6 270 41.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.1e-37 162.9 290 44.1
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.7e-37 160.6 243 44.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 6.3e-36 157.1 549 28.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.0e-29 135.6 215 43.7
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.6e-23 114.8 141 47.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 8.0e-23 113.6 297 35.0
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.2e-22 110.9 181 38.1
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.6e-21 108.6 109 47.7
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.3e-21 108.2 211 37.0
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-19 102.8 160 43.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.4e-16 90.1 212 35.8
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.6e-15 88.2 276 29.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 9.7e-13 80.1 151 39.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.0e-10 72.4 59 57.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 7.7e-10 70.5 109 36.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-09 69.7 77 50.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-09 68.6 250 33.2
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 8.0e-07 60.5 85 37.6
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.4e-06 59.7 102 41.2
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.3e-06 58.9 241 27.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.3e-06 58.9 80 41.2


User provided reference genes

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