Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 0.0e+00 1147.1 560 100.0
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 7.7e-295 1016.5 564 88.7
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-261 905.6 553 78.7
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-261 905.2 553 78.5
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.2e-261 904.4 553 78.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 5.5e-261 904.0 553 78.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 9.5e-261 903.3 553 78.7
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 7.0e-256 887.1 546 77.8
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.2e-255 886.3 555 76.9
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.3e-254 882.1 543 77.3
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 5.0e-254 880.9 551 77.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.9e-253 879.0 543 77.2
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.5e-253 878.6 546 77.7
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.3e-253 878.2 551 77.3
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 7.3e-253 877.1 543 77.0
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 9.5e-253 876.7 552 75.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.2e-252 876.3 546 77.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.6e-252 875.9 543 76.8
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.6e-252 875.9 543 76.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.1e-252 875.5 546 77.1
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 3.6e-252 874.8 564 75.7
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.7e-252 874.4 546 77.1
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 6.1e-252 874.0 555 76.0
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.0e-251 873.2 551 75.7
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.4e-251 872.8 543 76.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.4e-251 872.8 543 77.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.0e-251 871.7 543 76.2
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 3.0e-251 871.7 550 76.0
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.2e-251 870.9 556 76.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 5.2e-251 870.9 551 76.0
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 5.2e-251 870.9 543 76.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.5e-250 869.4 543 76.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.0e-250 869.0 543 75.9
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 2.0e-250 869.0 551 75.3
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 2.0e-250 869.0 546 76.0
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 5.7e-250 867.5 543 76.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 9.8e-250 866.7 543 76.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 9.8e-250 866.7 543 76.8
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.8e-250 866.7 546 76.0
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.3e-249 866.3 546 75.3
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.2e-249 865.5 543 76.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.9e-249 865.1 554 75.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 3.7e-249 864.8 554 74.9
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 4.9e-249 864.4 546 76.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 6.4e-249 864.0 546 76.6
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 8.3e-249 863.6 551 75.9
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 8.3e-249 863.6 547 76.1
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.1e-248 863.2 543 76.2
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.4e-248 862.8 543 76.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 2.4e-248 862.1 543 75.9
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 9.2e-248 860.1 543 76.4
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.2e-247 859.8 543 75.5
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.6e-247 859.4 546 75.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.6e-247 859.4 543 75.0
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.6e-247 859.4 551 75.3
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.6e-247 859.4 543 76.4
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.0e-247 859.0 552 75.0
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.0e-247 859.0 543 76.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 2.7e-247 858.6 543 76.4
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.5e-247 858.2 543 74.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 7.8e-247 857.1 550 74.7
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.0e-246 856.7 543 76.1
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.3e-246 856.3 546 75.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-246 856.3 546 76.0
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.3e-246 856.3 570 73.3
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.7e-246 855.9 547 75.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.3e-246 855.5 543 75.3
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.3e-246 855.5 549 75.4
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.0e-246 855.1 547 75.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 6.6e-246 854.0 555 74.1
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 8.6e-246 853.6 543 75.1
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-245 852.0 555 73.9
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 5.6e-245 850.9 543 74.4
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 5.6e-245 850.9 549 73.8
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.6e-245 850.9 546 76.2
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.3e-245 850.5 554 73.3
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.3e-245 850.5 543 74.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 7.3e-245 850.5 543 75.1
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.6e-244 849.4 548 74.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 6.2e-244 847.4 551 74.0
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 6.2e-244 847.4 548 74.3
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 8.0e-244 847.0 555 73.0
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 8.0e-244 847.0 543 74.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.3e-243 845.5 551 73.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 2.3e-243 845.5 545 75.0
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.1e-243 845.1 543 75.7
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 8.9e-243 843.6 551 73.7
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.4e-242 841.3 552 72.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 3.2e-240 835.1 551 73.1
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 2.7e-239 832.0 576 70.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.6e-237 824.3 543 72.6
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.6e-236 822.8 543 72.4
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 6.2e-236 820.8 543 72.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 2.0e-234 815.8 547 71.7
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 5.8e-234 814.3 543 70.3
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 3.2e-232 808.5 500 78.0
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 3.5e-231 805.1 522 74.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 6.8e-227 790.8 543 70.9
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.4e-226 788.1 539 70.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.6e-226 787.3 539 70.5
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.1e-223 779.2 555 69.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.0e-222 776.9 543 69.6
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.3e-222 776.5 495 75.2
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.9e-221 772.7 559 68.0
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.9e-221 772.7 545 68.4
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 5.6e-221 771.2 546 69.6
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.2e-220 767.7 546 70.1
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 3.8e-217 758.4 542 66.8
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 4.6e-215 751.5 548 66.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.3e-213 745.0 553 68.9
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 7.3e-213 744.2 543 67.4
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.9e-209 732.3 539 68.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.8e-209 731.9 533 67.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.8e-209 731.9 507 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.5e-207 725.3 536 66.6
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.0e-207 724.5 451 77.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.1e-203 712.2 541 64.7
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.2e-193 679.5 420 76.9
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.3e-190 669.5 420 75.7
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.3e-189 665.6 543 62.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.7e-189 664.8 540 63.9
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.7e-189 664.8 540 63.9
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.5e-168 595.1 612 53.6
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 2.8e-143 513.1 548 51.1
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.8e-143 513.1 330 73.6
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.6e-141 506.5 323 74.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 7.8e-138 495.0 546 52.4
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.0e-130 470.3 293 76.8
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.5e-128 464.2 306 74.2
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.3e-112 409.5 259 75.7
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.5e-104 384.4 333 61.3
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.6e-95 353.2 199 83.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.2e-79 299.3 499 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.3e-68 265.0 336 45.2
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 6.9e-62 242.7 190 62.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.2e-47 194.5 139 66.2
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.4e-46 191.0 126 70.6
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.0e-44 185.7 109 74.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.6e-42 177.2 119 71.4
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-41 174.5 114 75.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 4.0e-41 173.7 124 67.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.7e-40 169.9 132 62.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 3.7e-39 167.2 95 78.9
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 4.1e-38 163.7 122 63.9
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 4.1e-38 163.7 122 63.9
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.7e-36 158.3 112 69.6
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 3.2e-35 154.1 115 63.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 3.2e-35 154.1 115 63.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.0e-33 149.1 114 62.3
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.0e-33 149.1 114 62.3
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.0e-33 147.5 76 85.5
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.2e-24 119.0 118 52.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 5.9e-21 106.7 79 63.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 2.1e-18 98.2 186 37.6
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.6e-18 97.4 87 62.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 4.0e-17 94.0 63 68.3
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 9.8e-16 89.4 122 44.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 5.0e-12 77.0 55 65.5


User provided reference genes

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