Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 7.2e-110 400.6 203 100.0
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.2e-107 393.3 203 98.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-74 283.5 203 72.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-73 280.0 203 72.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.4e-65 251.5 198 66.7
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-40 170.2 204 44.6
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 6.0e-40 168.3 202 45.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.8e-39 166.8 195 45.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.8e-39 166.8 200 43.5
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-39 166.4 196 42.9
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.3e-39 166.4 199 45.7
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 8.7e-39 164.5 192 44.3
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.9e-38 163.3 202 43.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.9e-38 163.3 192 46.4
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-38 162.5 191 43.5
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-38 162.5 191 44.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.3e-38 162.5 192 45.3
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 5.6e-38 161.8 194 43.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.6e-38 161.8 192 43.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.4e-38 161.4 195 44.1
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 9.6e-38 161.0 193 42.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.6e-37 160.2 202 42.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.1e-37 159.8 195 43.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.8e-37 159.5 196 40.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.8e-37 159.5 199 44.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.8e-37 159.5 196 43.4
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.8e-37 158.7 198 44.4
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.8e-37 158.7 195 43.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.1e-37 157.9 202 44.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.1e-37 157.9 192 42.2
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.1e-36 157.5 202 44.1
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-36 157.5 194 44.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.8e-36 156.8 202 42.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.8e-36 156.8 192 42.7
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-36 156.8 192 43.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-36 156.8 197 43.7
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.8e-36 156.8 195 42.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.4e-36 156.4 195 43.6
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 4.0e-36 155.6 188 43.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.0e-36 155.6 197 43.1
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.0e-36 155.6 195 43.6
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.3e-36 155.2 193 43.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 5.3e-36 155.2 192 43.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 6.9e-36 154.8 193 43.0
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.9e-36 154.8 192 44.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.0e-36 154.5 203 42.9
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 9.0e-36 154.5 192 42.7
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.2e-35 154.1 192 43.2
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.2e-35 154.1 196 41.8
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.5e-35 153.7 196 40.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.5e-35 153.7 195 44.1
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.0e-35 153.3 198 40.9
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.6e-35 152.9 190 45.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.4e-35 152.5 191 42.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.4e-35 152.5 195 41.0
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.5e-35 152.1 198 42.4
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.5e-35 152.1 194 41.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.8e-35 151.8 198 41.4
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 5.8e-35 151.8 202 40.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.8e-35 151.8 198 44.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.8e-35 151.8 193 42.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 7.6e-35 151.4 188 40.4
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.0e-34 151.0 198 43.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.3e-34 150.6 194 44.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-34 150.6 197 41.1
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-34 150.6 199 41.2
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-34 150.2 188 42.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-34 150.2 188 42.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.7e-34 150.2 195 41.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.2e-34 149.8 190 42.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.9e-34 148.7 197 41.1
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 6.5e-34 148.3 195 40.5
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.4e-34 147.9 195 40.5
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.4e-34 147.9 193 40.9
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-33 147.5 195 40.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-33 147.1 198 41.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.4e-33 147.1 195 40.5
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.4e-33 147.1 188 41.5
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.4e-33 147.1 200 41.5
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.9e-33 146.7 193 39.4
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.5e-33 146.4 188 41.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 5.5e-33 145.2 195 42.1
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 5.5e-33 145.2 191 39.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 9.3e-33 144.4 203 40.4
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.6e-32 143.7 240 35.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.6e-32 143.7 203 39.9
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-32 142.9 196 41.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.7e-32 142.9 187 41.2
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.5e-32 142.5 195 42.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.6e-32 142.1 197 40.6
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.6e-32 142.1 194 41.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.9e-32 141.4 191 40.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 7.9e-32 141.4 195 41.5
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.9e-32 141.4 196 41.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.3e-31 140.6 197 39.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.3e-31 140.6 198 39.9
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.8e-31 140.2 197 41.1
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-31 139.8 196 38.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.0e-31 139.4 198 41.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 5.1e-31 138.7 195 38.5
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.1e-31 138.7 196 38.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 6.7e-31 138.3 194 35.6
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 6.7e-31 138.3 202 40.1
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.7e-31 137.9 191 40.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.7e-31 137.9 203 40.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.1e-30 137.5 194 35.1
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-30 137.5 197 38.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.1e-30 137.5 202 39.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.5e-30 136.3 192 40.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 4.3e-30 135.6 187 37.4
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 4.3e-30 135.6 178 42.1
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.7e-30 135.2 203 39.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 7.4e-30 134.8 194 35.1
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 9.6e-30 134.4 195 39.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.3e-29 134.0 194 35.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.3e-29 134.0 191 39.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-29 133.3 192 40.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.8e-29 132.9 194 38.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-29 132.5 173 41.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-29 132.5 196 37.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 4.8e-29 132.1 189 37.0
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.8e-29 132.1 192 39.6
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.8e-29 132.1 196 37.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 4.8e-29 132.1 196 38.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 8.2e-29 131.3 196 37.2
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.1e-28 131.0 190 40.5
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-28 130.6 193 35.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.8e-28 130.2 146 46.6
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.3e-28 128.6 191 38.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-27 127.5 196 36.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-27 127.5 196 37.2
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.0e-27 126.7 195 35.9
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-27 126.3 196 37.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-27 126.3 197 37.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.4e-27 125.9 164 43.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.5e-27 125.6 202 38.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.9e-27 125.2 198 34.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 5.9e-27 125.2 198 36.9
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 7.6e-27 124.8 196 34.2
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.0e-26 124.4 195 36.9
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.5e-26 121.7 175 40.6
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.2e-25 119.4 181 40.9
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 3.2e-25 119.4 200 38.0
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.5e-25 118.6 198 33.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 9.3e-25 117.9 182 39.6
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.2e-24 117.5 188 33.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.6e-24 117.1 189 34.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-24 116.7 194 36.1
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.7e-24 116.3 134 46.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-24 116.3 162 42.0
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.1e-24 115.2 152 40.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.9e-23 112.5 194 32.0
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.9e-22 110.2 140 39.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.6e-21 107.1 163 38.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 8.2e-21 104.8 157 35.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.6e-19 99.8 126 36.5
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.2e-18 96.7 157 35.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.5e-18 94.7 130 39.2
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.2e-17 92.8 193 30.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.2e-16 90.9 158 36.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 7.9e-16 88.2 113 41.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-15 87.4 148 33.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.9e-15 85.9 161 36.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.4e-12 77.4 115 40.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-12 77.0 201 29.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.1e-09 67.8 80 50.0
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-08 64.3 193 26.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 6.1e-08 62.0 226 23.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-07 60.5 86 40.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-06 57.4 225 22.7


User provided reference genes

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