Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb074990 Zea mays HOM05D051871 ORTHO05D014237 3.4e-202 708.8 550 100.0
Os05g0393900 Oryza sativa ssp. japonica HOM05D051871 ORTHO05D014237 2.3e-70 270.8 560 62.9
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 3.4e-37 160.6 502 52.4
Zm00001eb066340 Zea mays HOM05D017260 ORTHO05D014237 8.1e-31 139.4 493 43.6
Zm00001eb111970 Zea mays HOM05D017260 ORTHO05D014237 1.5e-29 135.2 474 48.9
HPP92_003815 Vanilla planifolia HOM05D017260 ORTHO05D014237 3.1e-22 110.9 200 32.0
HPP92_009300 Vanilla planifolia HOM05D017260 ORTHO05D014237 7.4e-16 89.7 196 34.2
Os04g0675600 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 3.7e-15 87.4 196 30.1
Nn7g37731 Nelumbo nucifera HOM05D030124 ORTHO05D014237 2.4e-14 84.7 192 28.1
Os03g0216300 Oryza sativa ssp. japonica HOM05D053449 ORTHO05D014237 1.5e-13 82.0 164 33.5
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 1.3e-09 68.9 174 27.0
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 8.7e-09 66.2 184 29.3
ClCG09G021740 Citrullus lanatus HOM05D016535 ORTHO05D000090 1.1e-08 65.9 107 32.7
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.1e-08 65.9 80 47.5
Cc07_g18960 Coffea canephora HOM05D000162 ORTHO05D000090 1.5e-08 65.5 122 37.7
vmacro13730 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.5e-08 65.5 116 32.8
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.9e-08 65.1 116 33.6
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 2.5e-08 64.7 138 31.9
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 2.5e-08 64.7 89 41.6
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 3.3e-08 64.3 106 35.8
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 5.7e-08 63.5 156 28.2
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 5.7e-08 63.5 177 30.5
Nitab4.5_0007991g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 5.7e-08 63.5 133 33.1
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 7.4e-08 63.2 165 29.7
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 7.4e-08 63.2 143 29.4
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.3e-07 62.4 145 31.7
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 1.3e-07 62.4 102 38.2
Gorai.011G155600 Gossypium raimondii HOM05D013428 ORTHO05D015803 1.3e-07 62.4 152 27.6
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 1.3e-07 62.4 98 37.8
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.3e-07 62.4 116 33.6
vmacro13802 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.3e-07 62.4 116 31.9
Migut.F00915 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.2e-07 61.6 128 32.0
Gohir.A10G126675 Gossypium hirsutum HOM05D013428 ORTHO05D015803 2.8e-07 61.2 151 28.5
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 2.8e-07 61.2 184 29.9
arahy.Tifrunner.gnm1.ann1.QV0CY4 Arachis hypogaea HOM05D000162 ORTHO05D000090 3.7e-07 60.8 161 28.0
Migut.F01992 Erythranthe guttata HOM05D007390 ORTHO05D009114 3.7e-07 60.8 107 35.5
CSS0041306 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 4.8e-07 60.5 116 31.9
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 4.8e-07 60.5 118 33.9
Gohir.D10G140025 Gossypium hirsutum HOM05D013428 ORTHO05D015803 4.8e-07 60.5 152 27.6
QL01p002403 Quercus lobata HOM05D006556 ORTHO05D008146 4.8e-07 60.5 170 30.0
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 4.8e-07 60.5 205 28.3
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 8.2e-07 59.7 182 28.6
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 8.2e-07 59.7 149 28.9
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 8.2e-07 59.7 138 34.1
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 8.2e-07 59.7 140 29.3
VMungo1127G0616 Vigna mungo HOM05D000001 ORTHO05D000003 8.2e-07 59.7 91 30.8
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 1.1e-06 59.3 77 40.3
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.1e-06 59.3 112 33.9
Nn3g20851 Nelumbo nucifera HOM05D013428 ORTHO05D018419 1.4e-06 58.9 96 35.4
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 1.4e-06 58.9 80 43.8
Nitab4.5_0010755g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 1.4e-06 58.9 133 32.3
SGA_v2.0_scaffold19G08853 Striga asiatica HOM05D000162 ORTHO05D000090 1.4e-06 58.9 138 29.0
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.8e-06 58.5 101 36.6
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.8e-06 58.5 106 33.0
CsaV3_1G010760 Cucumis sativus L. HOM05D002890 ORTHO05D000003 1.8e-06 58.5 117 35.9
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 1.8e-06 58.5 98 39.8
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 1.8e-06 58.5 76 46.1
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.8e-06 58.5 112 32.1
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 1.8e-06 58.5 86 38.4
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 1.8e-06 58.5 83 41.0
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 2.4e-06 58.2 101 34.7
SalBow3G3365 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.4e-06 58.2 116 32.8
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 3.1e-06 57.8 99 32.3
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 3.1e-06 57.8 106 33.0
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 3.1e-06 57.8 98 33.7
Cc02_g34440 Coffea canephora HOM05D000162 ORTHO05D000090 3.1e-06 57.8 132 29.5
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 3.1e-06 57.8 179 26.3
Peaxi162Scf00154g00046 Petunia axillaris HOM05D000162 ORTHO05D000090 3.1e-06 57.8 127 33.9
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.1e-06 57.4 155 26.5
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 4.1e-06 57.4 127 30.7
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 4.1e-06 57.4 145 31.0
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 4.1e-06 57.4 179 28.5
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 4.1e-06 57.4 181 25.4
Hund21891 Selenicereus undatus HOM05D008994 ORTHO05D010954 4.1e-06 57.4 117 31.6
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 5.3e-06 57.0 85 36.5
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 5.3e-06 57.0 79 40.5
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 5.3e-06 57.0 77 41.6
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 5.3e-06 57.0 114 28.9
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 5.3e-06 57.0 136 27.2
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 5.3e-06 57.0 116 29.3
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 5.3e-06 57.0 126 30.2
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 6.9e-06 56.6 132 28.0
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 6.9e-06 56.6 180 25.0
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 6.9e-06 56.6 154 24.0
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 6.9e-06 56.6 83 36.1
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 6.9e-06 56.6 105 35.2
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 9.0e-06 56.2 114 32.5
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 9.0e-06 56.2 186 27.4
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 9.0e-06 56.2 160 28.8


User provided reference genes

Program Settings