Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 0.0e+00 2017.7 1783 100.0
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 2.8e-189 667.5 1495 57.4
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 2.7e-83 315.5 352 69.6
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 7.6e-38 164.5 955 25.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.0e-34 154.1 931 27.9
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.5e-33 149.4 958 23.7
Os04g0614700 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 3.3e-33 149.1 176 60.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 7.2e-28 131.3 1608 31.0
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 6.7e-26 124.8 687 29.7
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.7e-24 120.2 699 24.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 4.8e-24 118.6 551 28.3
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.3e-23 115.2 544 27.9
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 6.9e-23 114.8 503 26.0
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 6.9e-23 114.8 273 34.1
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.3e-21 110.5 272 32.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.3e-21 110.5 585 26.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.9e-21 109.4 674 30.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.9e-21 109.4 839 24.2
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 8.5e-21 107.8 805 26.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 8.5e-21 107.8 670 27.0
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.9e-20 106.7 786 25.2
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.9e-20 106.7 475 25.7
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.5e-20 106.3 271 33.9
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 5.5e-20 105.1 525 25.0
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.5e-20 105.1 697 25.8
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-19 104.0 708 24.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.6e-19 103.6 272 39.0
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.6e-19 103.6 804 23.1
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 4.7e-19 102.1 528 24.4
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.4e-18 100.5 716 25.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.3e-18 99.8 530 28.5
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.0e-18 99.4 706 27.3
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.2e-18 98.6 149 43.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 6.7e-18 98.2 869 22.7
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.0e-17 96.7 226 32.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.0e-17 96.7 1584 31.6
Zm00001eb427940 Zea mays HOM05D003806 ORTHO05D004346 2.6e-17 96.3 53 98.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.3e-17 95.9 672 24.0
Zm00001eb350060 Zea mays HOM05D003806 ORTHO05D004346 4.4e-17 95.5 53 96.2
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 5.7e-17 95.1 873 25.4
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 5.7e-17 95.1 705 24.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.3e-16 94.0 477 27.0
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.2e-16 93.2 707 25.7
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.8e-16 92.8 464 25.9
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.3e-16 91.7 147 42.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.3e-16 91.7 677 31.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.4e-15 89.7 711 26.0
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 4.1e-15 89.0 701 23.8
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 7.0e-15 88.2 149 38.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 7.0e-15 88.2 618 27.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.2e-14 87.4 664 24.1
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.6e-14 87.0 216 31.0
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 3.5e-14 85.9 742 23.5
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 3.5e-14 85.9 153 36.6
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 7.7e-14 84.7 550 23.8
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 7.7e-14 84.7 100 47.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.0e-13 84.3 712 23.9
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.0e-13 82.0 128 40.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.1e-12 80.9 732 23.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-12 80.5 449 25.2
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.9e-12 80.1 325 24.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 7.2e-12 78.2 101 45.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 9.4e-12 77.8 219 29.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.7e-11 76.3 128 38.3
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 3.6e-11 75.9 482 24.3
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 6.1e-11 75.1 697 25.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 8.0e-11 74.7 703 28.6
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.0e-10 74.3 221 28.5
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.4e-10 73.9 699 25.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.8e-10 73.6 93 45.2
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.2e-10 72.0 91 45.1
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 6.7e-10 71.6 275 28.4
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 8.8e-10 71.2 148 33.1
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 3.3e-09 69.3 169 33.1
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.3e-09 69.3 678 22.0
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.4e-09 68.9 87 46.0
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.4e-09 68.9 972 21.7
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 4.4e-09 68.9 130 34.6
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 7.5e-09 68.2 716 27.7
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 9.7e-09 67.8 481 23.7
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.7e-08 67.0 154 33.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.7e-08 67.0 154 33.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.7e-08 67.0 154 33.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-08 66.6 811 23.3
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.8e-08 65.5 63 50.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.8e-08 65.5 481 22.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 4.8e-08 65.5 706 22.7
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 6.3e-08 65.1 722 23.3
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 8.2e-08 64.7 314 25.2
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.1e-07 64.3 63 49.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-07 64.3 215 26.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-07 63.9 63 49.2
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.4e-07 63.2 63 47.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-07 62.4 392 22.7
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 5.3e-07 62.0 156 32.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 7.0e-07 61.6 86 43.0
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.1e-07 61.2 699 25.9
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-06 60.8 422 24.2
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.0e-06 60.1 604 27.2
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.5e-06 59.3 643 24.1
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.5e-06 59.3 65 41.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.5e-06 58.9 65 41.5
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.5e-06 58.9 65 41.5
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 5.9e-06 58.5 60 45.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 5.9e-06 58.5 102 35.3


User provided reference genes

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