Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.0e-93 344.7 175 100.0
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 6.5e-83 310.8 175 92.0
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.0e-72 276.9 170 81.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 7.7e-68 260.8 168 76.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.7e-67 259.6 168 78.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.9e-67 258.8 168 76.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.8e-67 258.5 168 78.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-66 256.9 172 75.0
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-66 256.5 168 74.4
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.9e-66 256.1 168 76.8
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-66 256.1 168 74.4
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.5e-66 255.8 168 74.4
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.5e-66 255.8 166 75.9
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.2e-66 255.4 169 75.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.2e-66 255.4 168 76.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.2e-66 255.4 169 75.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.2e-66 255.4 166 75.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.2e-66 255.4 166 75.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 4.2e-66 255.0 168 74.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.5e-66 254.6 168 75.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.5e-66 254.6 168 76.8
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.5e-66 254.6 168 76.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 7.2e-66 254.2 168 75.0
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 7.2e-66 254.2 168 76.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-66 253.8 167 76.6
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 9.4e-66 253.8 167 76.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 9.4e-66 253.8 169 74.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 9.4e-66 253.8 168 76.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.6e-65 253.1 168 73.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.6e-65 253.1 168 76.2
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.6e-65 253.1 166 74.7
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.6e-65 253.1 168 75.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 2.1e-65 252.7 168 76.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.7e-65 252.3 167 76.6
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.7e-65 252.3 167 76.6
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.7e-65 252.3 167 76.6
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-65 252.3 167 76.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.6e-65 251.9 168 73.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.7e-65 251.5 168 75.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.7e-65 251.5 168 74.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 6.1e-65 251.1 168 75.6
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-65 251.1 167 75.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 8.0e-65 250.8 168 75.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 8.0e-65 250.8 168 73.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.8e-64 249.6 168 73.8
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 3.9e-64 248.4 167 73.7
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.9e-64 248.4 168 72.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.9e-64 248.4 168 73.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.9e-64 248.4 168 74.4
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.2e-64 248.1 168 74.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 6.7e-64 247.7 168 72.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.7e-64 247.7 168 75.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.5e-63 246.5 181 70.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.5e-63 246.5 168 73.2
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.0e-63 246.1 168 73.2
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.0e-63 246.1 168 71.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.6e-63 245.7 168 73.2
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.6e-63 245.7 168 73.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.4e-63 245.0 168 74.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 7.4e-63 244.2 167 69.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.4e-63 244.2 168 73.2
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 9.7e-63 243.8 168 73.2
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 9.7e-63 243.8 168 70.8
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.7e-62 243.0 167 73.1
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.2e-62 242.7 168 70.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-62 242.7 168 75.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.8e-62 242.3 167 72.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.7e-62 241.9 183 68.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 6.3e-62 241.1 163 74.8
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.3e-62 241.1 167 73.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 8.2e-62 240.7 167 73.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-61 240.0 184 69.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.4e-61 240.0 168 71.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.4e-61 240.0 167 73.1
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-61 239.6 184 69.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-61 239.6 184 69.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.1e-61 237.3 168 70.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.2e-60 236.9 189 66.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.0e-60 236.1 150 76.7
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.0e-60 236.1 168 67.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.6e-60 235.7 168 68.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.5e-60 235.3 168 67.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.7e-60 234.2 149 75.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 7.7e-60 234.2 168 67.3
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.0e-59 233.8 168 67.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-59 233.8 168 68.5
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.0e-59 233.8 168 67.9
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.2e-59 232.6 168 67.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.2e-59 232.6 150 76.7
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-59 232.6 150 76.0
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.9e-59 232.3 214 58.4
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.9e-59 232.3 151 76.2
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.0e-59 231.5 164 71.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.0e-59 231.5 206 61.2
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.5e-59 231.1 146 78.1
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.5e-59 230.7 168 66.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 8.5e-59 230.7 153 74.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.5e-58 229.9 168 67.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.5e-58 229.9 168 67.3
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.9e-58 229.6 168 66.1
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.9e-58 229.6 150 74.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.9e-58 229.6 165 67.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.2e-58 228.4 195 63.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.2e-57 226.9 168 65.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.7e-57 225.7 144 78.5
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.6e-57 225.3 149 74.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 4.7e-57 224.9 167 64.7
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.0e-56 223.8 170 65.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.8e-56 223.0 168 66.1
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.0e-56 222.2 151 74.8
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 4.0e-56 221.9 168 65.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.0e-56 221.9 168 66.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.4e-55 218.8 239 51.5
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 4.4e-55 218.4 153 69.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-50 203.8 178 63.5
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.5e-50 203.4 150 66.7
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.2e-49 200.3 125 74.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-49 199.5 152 69.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 3.6e-49 198.7 123 75.6
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-48 196.4 145 66.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.8e-48 196.4 121 80.2
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.0e-48 195.3 150 64.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.0e-48 195.3 125 75.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.0e-47 193.0 169 62.1
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.6e-47 192.6 189 55.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-47 192.6 127 75.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 4.4e-47 191.8 167 64.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.3e-46 190.3 121 76.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-46 189.5 125 75.2
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-46 189.1 125 74.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-46 189.1 125 74.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.9e-46 188.3 172 59.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 6.3e-46 188.0 125 73.6
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.1e-45 187.2 121 77.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.4e-45 186.0 152 59.9
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.0e-45 184.5 155 59.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.6e-44 183.3 131 67.2
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.5e-42 176.8 156 60.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.6e-42 174.9 144 66.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 5.6e-42 174.9 165 55.2
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.2e-42 174.5 143 65.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-39 167.2 110 76.4
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.2e-39 167.2 130 62.3
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.4e-37 158.3 86 89.5
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-34 149.8 94 83.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 5.8e-31 138.3 83 81.9
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.7e-30 136.7 115 60.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 3.2e-29 132.5 91 68.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.7e-28 129.4 87 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.0e-28 128.3 99 65.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-27 127.1 73 86.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.0e-24 115.5 82 65.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-21 105.1 101 54.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-20 102.1 74 64.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-17 92.8 63 69.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.7e-17 92.0 157 36.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.9e-16 87.8 65 66.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.4e-15 85.5 169 36.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 9.9e-15 84.3 128 38.3
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.4e-13 80.5 77 55.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-13 78.6 49 77.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-13 78.6 49 77.6
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.1e-12 76.6 74 50.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-08 63.9 75 53.3
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-07 59.7 46 54.3


User provided reference genes

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