Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 4.8e-79 297.7 147 100.0
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 4.8e-79 297.7 147 100.0
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.2e-63 245.7 135 88.1
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.6e-48 195.7 136 74.3
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.4e-48 194.9 144 66.7
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 7.4e-48 194.1 131 73.3
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 3.7e-47 191.8 140 70.0
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 4.8e-47 191.4 129 72.9
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 6.3e-47 191.0 138 68.8
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.1e-46 190.3 130 72.3
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 2.4e-46 189.1 132 68.9
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.4e-46 189.1 138 66.7
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 3.1e-46 188.7 131 71.8
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.1e-46 188.3 140 67.9
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.3e-46 188.0 132 72.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 5.3e-46 188.0 132 72.0
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 5.3e-46 188.0 140 67.9
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 7.0e-46 187.6 132 70.5
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 7.0e-46 187.6 132 70.5
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.2e-45 186.8 140 67.1
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.5e-45 186.4 132 72.0
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.5e-45 186.4 129 68.2
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.5e-45 186.4 130 70.0
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.0e-45 186.0 133 68.4
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.0e-45 186.0 133 68.4
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.0e-45 186.0 130 70.8
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.6e-45 185.7 136 67.6
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 3.4e-45 185.3 128 71.1
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 4.5e-45 184.9 128 70.3
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 5.9e-45 184.5 131 69.5
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 7.7e-45 184.1 138 65.9
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 7.7e-45 184.1 128 68.0
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 7.7e-45 184.1 151 62.3
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.0e-44 183.7 130 70.8
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.0e-44 183.7 128 67.2
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.0e-44 183.7 140 67.9
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.0e-44 183.7 132 67.4
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.0e-44 183.7 142 68.3
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.0e-44 183.7 129 69.8
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.3e-44 183.3 130 70.0
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.7e-44 183.0 129 69.0
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.7e-44 183.0 129 69.8
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.7e-44 183.0 128 68.8
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.7e-44 183.0 135 68.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.2e-44 182.6 136 66.9
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.2e-44 182.6 130 66.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.2e-44 182.6 129 69.0
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 2.9e-44 182.2 130 68.5
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 3.8e-44 181.8 143 66.4
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.8e-44 181.8 133 69.2
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 3.8e-44 181.8 135 65.9
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.8e-44 181.8 131 67.2
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 6.5e-44 181.0 131 66.4
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 6.5e-44 181.0 136 67.6
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 1.1e-43 180.3 131 66.4
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.1e-43 180.3 130 66.9
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.1e-43 180.3 138 65.2
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.4e-43 179.9 136 67.6
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.4e-43 179.9 130 66.9
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-43 179.9 133 66.2
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 2.5e-43 179.1 129 69.8
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.5e-43 179.1 133 66.2
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.5e-43 179.1 129 69.0
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 3.2e-43 178.7 129 67.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.2e-43 178.7 130 66.9
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 5.5e-43 177.9 131 64.9
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 7.2e-43 177.6 132 65.9
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 9.4e-43 177.2 131 66.4
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 9.4e-43 177.2 135 66.7
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 9.4e-43 177.2 135 66.7
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.6e-42 176.4 131 65.6
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.1e-42 176.0 129 69.0
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.7e-42 175.6 124 66.1
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.7e-42 175.6 128 64.8
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.7e-42 175.6 130 67.7
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 3.6e-42 175.3 109 76.1
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 3.6e-42 175.3 132 64.4
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 3.6e-42 175.3 135 65.9
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.6e-42 175.3 130 66.2
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.7e-42 174.9 124 65.3
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 6.1e-42 174.5 135 65.2
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 2.3e-41 172.6 129 67.4
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 3.0e-41 172.2 142 62.0
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 3.0e-41 172.2 129 65.1
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.9e-41 171.8 133 63.2
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 5.2e-41 171.4 146 60.3
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 5.2e-41 171.4 146 60.3
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 5.2e-41 171.4 146 60.3
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 5.2e-41 171.4 146 60.3
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 5.2e-41 171.4 136 63.2
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 5.2e-41 171.4 140 62.9
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.2e-41 171.4 129 67.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 6.7e-41 171.0 109 69.7
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 8.8e-41 170.6 129 67.4
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.5e-40 169.9 109 69.7
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 5.7e-40 167.9 108 69.4
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 5.7e-40 167.9 107 70.1
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 5.7e-40 167.9 107 70.1
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 5.7e-40 167.9 107 70.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 5.7e-40 167.9 129 65.9
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 7.4e-40 167.5 107 70.1
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 7.4e-40 167.5 107 70.1
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 7.4e-40 167.5 110 70.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 7.4e-40 167.5 107 70.1
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 7.4e-40 167.5 129 66.7
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 9.7e-40 167.2 107 69.2
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.3e-39 166.8 108 68.5
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.2e-39 166.0 107 70.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 8.2e-39 164.1 115 64.3
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 8.2e-39 164.1 115 64.3
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.1e-38 163.7 107 67.3
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 1.1e-38 163.7 142 59.9
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 7.7e-37 157.5 130 58.5
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.3e-36 156.8 130 60.0
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.2e-36 156.0 130 60.0
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.2e-36 156.0 130 59.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.1e-35 153.7 119 65.5
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 4.7e-34 148.3 113 64.6
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.2e-32 143.7 132 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.0e-29 132.9 129 54.3
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 2.0e-29 132.9 77 74.0
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.0e-28 130.6 93 62.4
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.3e-28 130.2 128 52.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 7.2e-27 124.4 86 62.8
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.6e-26 123.2 118 56.8
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.8e-25 119.8 130 51.5
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 4.0e-25 118.6 103 55.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 4.4e-24 115.2 100 59.0
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 2.7e-21 105.9 136 47.8
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 3.5e-21 105.5 119 45.4
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.7e-20 103.2 99 51.5
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 1.1e-19 100.5 67 73.1
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 5.5e-19 98.2 115 44.3
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 7.2e-19 97.8 60 65.0
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.6e-18 96.7 81 66.7
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.5e-16 90.1 52 69.2
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 3.4e-16 89.0 74 63.5
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 7.5e-16 87.8 52 69.2
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 3.7e-15 85.5 56 73.2
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 3.7e-15 85.5 70 52.9
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 4.5e-13 78.6 75 49.3
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.9e-12 75.9 117 40.2
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 4.3e-11 72.0 157 36.3
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 7.3e-11 71.2 56 62.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 8.0e-10 67.8 63 49.2
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 8.9e-09 64.3 73 45.2
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 2.6e-08 62.8 80 42.5
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 8.3e-07 57.8 76 47.4


User provided reference genes

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