Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 8.8e-134 480.3 250 100.0
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 2.3e-89 332.8 246 73.6
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 4.3e-80 302.0 166 94.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 9.6e-56 221.1 215 52.1
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.7e-55 219.2 215 51.6
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.4e-54 217.2 215 51.6
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 5.3e-54 215.3 219 52.5
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 6.5e-52 208.4 221 52.0
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 6.5e-52 208.4 213 52.1
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 7.2e-51 204.9 235 47.7
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 1.6e-50 203.8 215 48.4
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.7e-50 203.0 218 50.5
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.6e-50 202.6 240 49.2
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 6.1e-50 201.8 216 49.5
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 7.9e-50 201.4 213 51.2
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 7.9e-50 201.4 216 48.1
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.8e-49 200.3 233 48.9
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.8e-49 200.3 216 47.7
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 2.3e-49 199.9 216 48.6
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.0e-49 199.5 230 47.0
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 5.1e-49 198.7 218 47.7
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 6.7e-49 198.4 240 48.3
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 1.5e-48 197.2 226 47.3
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.9e-48 196.8 220 48.2
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.9e-48 196.8 258 43.4
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 2.5e-48 196.4 224 47.3
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 5.7e-48 195.3 221 48.4
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 5.7e-48 195.3 217 47.9
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 9.7e-48 194.5 240 47.5
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 1.6e-47 193.7 220 48.2
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.2e-47 193.4 230 47.8
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 4.8e-47 192.2 210 50.0
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 8.2e-47 191.4 235 45.1
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.8e-46 190.3 237 45.6
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 1.8e-46 190.3 239 44.8
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 2.4e-46 189.9 244 44.3
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 3.1e-46 189.5 219 47.9
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 4.1e-46 189.1 228 46.1
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 6.9e-46 188.3 244 43.9
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 9.1e-46 188.0 231 45.5
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.2e-45 187.6 216 44.9
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.5e-45 187.2 240 46.2
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 2.0e-45 186.8 214 47.7
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 2.0e-45 186.8 202 50.0
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 4.5e-45 185.7 238 46.2
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 4.5e-45 185.7 235 44.7
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 7.7e-45 184.9 225 46.2
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.0e-44 184.5 212 47.6
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 2.2e-44 183.3 227 43.6
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.9e-44 183.0 217 46.5
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 5.0e-44 182.2 228 46.9
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 5.0e-44 182.2 217 46.5
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 6.5e-44 181.8 230 44.3
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 1.1e-43 181.0 257 43.2
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 4.2e-43 179.1 200 47.5
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-42 177.6 230 46.1
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 1.6e-42 177.2 213 48.4
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 4.6e-42 175.6 215 43.7
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 4.6e-42 175.6 216 44.4
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 7.9e-42 174.9 205 46.3
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.0e-41 174.5 240 44.2
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.0e-41 174.5 215 46.5
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.0e-41 174.5 214 45.8
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.0e-41 174.5 225 44.4
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.3e-41 173.3 218 45.4
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 8.8e-41 171.4 214 43.5
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.5e-40 170.6 238 44.5
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 2.0e-40 170.2 217 42.4
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 4.4e-40 169.1 214 43.9
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 5.7e-40 168.7 217 41.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 7.4e-40 168.3 217 41.9
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.4e-40 168.3 205 46.3
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 9.7e-40 167.9 217 42.9
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 4.8e-39 165.6 217 41.5
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 4.8e-39 165.6 217 41.5
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 8.2e-39 164.9 235 43.0
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.1e-38 164.5 204 45.6
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.8e-38 163.7 217 41.0
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 4.1e-38 162.5 214 42.5
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.2e-37 161.0 228 43.0
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 1.5e-37 160.6 217 40.6
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 3.4e-37 159.5 165 52.1
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 7.7e-37 158.3 210 44.3
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 5.0e-36 155.6 213 40.8
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 3.2e-35 152.9 212 43.4
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 6.1e-34 148.7 227 39.2
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.5e-32 144.1 214 39.3
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 7.4e-32 141.7 312 32.7
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 2.8e-31 139.8 175 45.1
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 3.1e-30 136.3 182 42.3
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 3.1e-30 136.3 212 38.7
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 6.5e-28 128.6 216 36.6
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 4.2e-27 125.9 204 36.8
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 2.1e-26 123.6 179 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 2.7e-26 123.2 178 43.3
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 1.4e-22 110.9 131 46.6
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.8e-22 110.5 148 43.9
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 5.3e-22 109.0 132 47.7
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 4.5e-21 105.9 153 43.8
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.3e-20 104.4 214 35.5
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 2.7e-18 96.7 130 44.6
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 3.6e-18 96.3 93 49.5
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.5e-16 90.9 239 32.2
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 7.0e-14 82.0 116 42.2
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 1.3e-07 61.2 46 58.7
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 5.4e-06 55.8 121 31.4


User provided reference genes

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