Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064610 Zea mays HOM05D000439 ORTHO05D006154 3.3e-151 538.9 395 100.0
Os03g0851400 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006154 1.6e-36 157.9 170 57.6
ClCG04G003180 Citrullus lanatus HOM05D000439 ORTHO05D006154 1.6e-17 94.7 176 35.8
Psat5g056000 Pisum sativum HOM05D000439 ORTHO05D006154 1.6e-17 94.7 173 37.6
Phvul.009G159400 Phaseolus vulgaris HOM05D000439 ORTHO05D006154 4.8e-17 93.2 177 35.6
MELO3C003262.2 Cucumis melo HOM05D000439 ORTHO05D006154 6.3e-17 92.8 173 35.8
arahy.Tifrunner.gnm1.ann1.94UTWG Arachis hypogaea HOM05D000439 ORTHO05D006154 1.1e-16 92.0 178 34.3
arahy.Tifrunner.gnm1.ann1.R8UNTY Arachis hypogaea HOM05D000439 ORTHO05D006154 1.1e-16 92.0 178 34.3
Aqoxy5G03342 Aquilegia oxysepala HOM05D000439 ORTHO05D006154 4.1e-16 90.1 184 29.9
Sed0010080 Sechium edule HOM05D000439 ORTHO05D006154 4.1e-16 90.1 183 33.9
CsaV3_4G029810 Cucumis sativus L. HOM05D000439 ORTHO05D006154 9.0e-16 89.0 173 35.3
MBI07_g11053_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006154 1.2e-15 88.6 184 33.2
Medtr3g098290 Medicago truncatula HOM05D000439 ORTHO05D006154 1.5e-15 88.2 171 36.8
VMungo1309G2046 Vigna mungo HOM05D000439 ORTHO05D006154 2.0e-15 87.8 177 35.0
Ca_17046_v3 Cicer arietinum L. HOM05D000422 ORTHO05D001248 1.3e-14 85.1 177 33.3
Glyma.04G203400 Glycine max HOM05D000439 ORTHO05D006154 1.3e-14 85.1 178 34.3
TPR.G7812 Trifolium pratense HOM05D000439 ORTHO05D006154 1.7e-14 84.7 174 34.5
ATR0582G020 Amborella trichopoda HOM05D000439 ORTHO05D006154 2.9e-14 84.0 183 33.9
Lalb_Chr11g0068951 Lupinus albus HOM05D000439 ORTHO05D006154 6.5e-14 82.8 177 32.2
SGA_v2.0_scaffold5G02819 Striga asiatica HOM05D000439 ORTHO05D006154 6.5e-14 82.8 177 33.9
Cpa.g.sc13.206 Carica papaya HOM05D000439 ORTHO05D006154 8.5e-14 82.4 185 30.8
Nn3g16172 Nelumbo nucifera HOM05D000439 ORTHO05D006154 1.4e-13 81.6 183 33.3
Nitab4.5_0000976g0310 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.5e-13 80.9 183 31.7
QL10p000140 Quercus lobata HOM05D000439 ORTHO05D006154 2.5e-13 80.9 161 33.5
Duzib084G0576 Durio zibethinus HOM05D000439 ORTHO05D006154 3.2e-13 80.5 183 32.2
Glyma.06G162100 Glycine max HOM05D000439 ORTHO05D006154 4.2e-13 80.1 178 33.7
Lj1g0000423 Lotus japonicus HOM05D000439 ORTHO05D006154 4.2e-13 80.1 176 33.0
Gohir.A07G045400 Gossypium hirsutum HOM05D000439 ORTHO05D006154 5.5e-13 79.7 177 32.2
Nitab4.5_0007669g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006154 5.5e-13 79.7 161 32.3
Thecc.03G143900 Theobroma cacao HOM05D000439 ORTHO05D006154 5.5e-13 79.7 185 31.9
Eucgr.H00244 Eucalyptus grandis HOM05D000439 ORTHO05D006154 7.2e-13 79.3 162 36.4
Gorai.001G052900 Gossypium raimondii HOM05D000439 ORTHO05D006154 7.2e-13 79.3 177 32.8
Duzib205G0088 Durio zibethinus HOM05D000439 ORTHO05D006154 9.4e-13 79.0 183 31.7
GSVIVG01014063001 Vitis vinifera HOM05D000439 ORTHO05D006154 9.4e-13 79.0 183 31.1
Cc04_g05540 Coffea canephora HOM05D000439 ORTHO05D006154 1.2e-12 78.6 184 32.1
AL8G25340 Arabidopsis lyrata HOM05D000439 ORTHO05D006154 6.1e-12 76.3 180 31.1
Actinidia36853 Actinidia chinensis HOM05D000439 ORTHO05D006154 7.9e-12 75.9 184 32.1
Gorai.003G118000 Gossypium raimondii HOM05D000439 ORTHO05D006154 7.9e-12 75.9 183 31.7
Gohir.D03G111600 Gossypium hirsutum HOM05D000439 ORTHO05D006154 1.0e-11 75.5 183 31.7
Dinv13691 Davidia involucrata HOM05D000439 ORTHO05D006154 1.4e-11 75.1 183 30.1
Gohir.A03G055200 Gossypium hirsutum HOM05D000439 ORTHO05D006154 1.8e-11 74.7 183 31.7
Potri.015G110066 Populus trichocarpa HOM05D000439 ORTHO05D006154 1.8e-11 74.7 178 30.9
AT4G00650 Arabidopsis thaliana HOM05D000439 ORTHO05D006154 2.3e-11 74.3 172 32.0
Nitab4.5_0012621g0010 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.3e-11 74.3 181 32.6
Actinidia08922 Actinidia chinensis HOM05D000439 ORTHO05D006154 3.9e-11 73.6 181 31.5
COL.COLO4_37292 Corchorus olitorius HOM05D000439 ORTHO05D006154 5.1e-11 73.2 184 31.0
A03p16370 Brassica napus HOM05D000439 ORTHO05D006154 8.8e-11 72.4 188 31.9
BraA03t10927Z Brassica rapa HOM05D000439 ORTHO05D006154 8.8e-11 72.4 187 32.1
Migut.I00648 Erythranthe guttata HOM05D000439 ORTHO05D006154 1.1e-10 72.0 185 33.0
Peaxi162Scf00091g00516 Petunia axillaris HOM05D000439 ORTHO05D006154 1.1e-10 72.0 182 29.1
C03p19250 Brassica napus HOM05D000439 ORTHO05D006154 1.5e-10 71.6 185 30.3
BolC3t14311H Brassica oleracea HOM05D000439 ORTHO05D006154 1.5e-10 71.6 185 30.3
CSS0035359 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006154 1.5e-10 71.6 183 30.1
Carub.0008s1113 Capsella rubella HOM05D000439 ORTHO05D006154 1.5e-10 71.6 183 29.5
Manes.14G042300 Manihot esculenta HOM05D000439 ORTHO05D006154 1.5e-10 71.6 179 29.6
TAR374G1365 Trochodendron aralioides HOM05D000439 ORTHO05D006154 1.5e-10 71.6 174 30.5
Nitab4.5_0000976g0300 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.5e-10 70.9 152 31.6
Manes.06G128900 Manihot esculenta HOM05D000439 ORTHO05D006154 3.3e-10 70.5 176 32.4
BcaC01g06069 Brassica carinata HOM05D000439 ORTHO05D006154 5.7e-10 69.7 185 29.7
ECA246G1416 Erigeron canadensis HOM05D000439 ORTHO05D006154 5.7e-10 69.7 186 26.9
Sopen03g036830 Solanum pennellii HOM05D000439 ORTHO05D006154 9.7e-10 68.9 162 33.3
Oeu051173.1 Olea europaea HOM05D000439 ORTHO05D006154 1.3e-09 68.6 187 30.5
BraSC35t45999Z Brassica rapa HOM05D000439 ORTHO05D006154 1.7e-09 68.2 186 28.5
MBI11_g04259_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006154 2.2e-09 67.8 161 32.9
THA.LOC104808041 Tarenaya hassleriana HOM05D000439 ORTHO05D006154 2.2e-09 67.8 174 28.7
Peaxi162Scf00091g00412 Petunia axillaris HOM05D000439 ORTHO05D006154 2.8e-09 67.4 153 30.7
Solyc03g117930.4 Solanum lycopersicum HOM05D000439 ORTHO05D006154 2.8e-09 67.4 162 32.7
TWI14G1070 Tripterygium wilfordii HOM05D000439 ORTHO05D006154 2.8e-09 67.4 176 28.4
A10p08000 Brassica napus HOM05D000439 ORTHO05D006154 3.7e-09 67.0 186 29.0
TWI23G1133 Tripterygium wilfordii HOM05D000439 ORTHO05D006154 3.7e-09 67.0 183 26.8
Sp6g13280 Schrenkiella parvula HOM05D000439 ORTHO05D006154 4.8e-09 66.6 190 28.4
Sopen06g030920 Solanum pennellii HOM05D000439 ORTHO05D006154 4.8e-09 66.6 181 30.9
PGSC0003DMG400044295 Solanum tuberosum HOM05D000439 ORTHO05D006154 6.3e-09 66.2 179 30.7
DCAR_025619 Daucus carota HOM05D000439 ORTHO05D006154 8.2e-09 65.9 178 29.2
Ciclev10033769m.g Citrus clementina HOM05D000439 ORTHO05D006154 1.1e-08 65.5 183 28.4
Lj9P489T62 Lonicera japonica HOM05D000439 ORTHO05D006154 1.1e-08 65.5 172 32.0
Nitab4.5_0001000g0080 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.1e-08 65.5 181 27.6
Rhsim12G0182700 Rhododendron simsii HOM05D000439 ORTHO05D006154 1.1e-08 65.5 183 29.5
Dinv23249 Davidia involucrata HOM05D000439 ORTHO05D006154 1.4e-08 65.1 209 28.7
Nitab4.5_0000433g0080 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.4e-08 65.1 176 29.5
VMungo1309G0148 Vigna mungo HOM05D000439 ORTHO05D006154 1.4e-08 65.1 179 27.9
PGSC0003DMG400031150 Solanum tuberosum HOM05D000439 ORTHO05D006154 1.8e-08 64.7 187 29.4
Aa31LG3G7580 Aethionema arabicum HOM05D000439 ORTHO05D006154 3.1e-08 63.9 173 28.9
Thhalv10012996m.g Eutrema salsugineum HOM05D000439 ORTHO05D006154 3.1e-08 63.9 184 27.7
Lsat_1_v5_gn_5_9321 Lactuca sativa HOM05D000439 ORTHO05D006154 3.1e-08 63.9 182 26.9
Sopen04g028360 Solanum pennellii HOM05D000439 ORTHO05D006154 3.1e-08 63.9 176 30.1
CAN.G1008.33 Capsicum annuum HOM05D000439 ORTHO05D006154 4.1e-08 63.5 184 30.4
PGSC0003DMG400031151 Solanum tuberosum HOM05D000439 ORTHO05D006154 4.1e-08 63.5 175 30.3
BcaC01g06107 Brassica carinata HOM05D000439 ORTHO05D006154 5.3e-08 63.2 185 29.2
BcaC04g20734 Brassica carinata HOM05D000439 ORTHO05D006154 5.3e-08 63.2 183 27.3
C09p39760 Brassica napus HOM05D000439 ORTHO05D006154 5.3e-08 63.2 183 27.3
BolC9t56878H Brassica oleracea HOM05D000439 ORTHO05D006154 5.3e-08 63.2 183 27.3
Nitab4.5_0001000g0070 Nicotiana tabacum HOM05D000439 ORTHO05D006154 5.3e-08 63.2 176 29.5
Solyc04g072200.3 Solanum lycopersicum HOM05D000439 ORTHO05D006154 5.3e-08 63.2 176 30.1
Sopen03g036820 Solanum pennellii HOM05D000439 ORTHO05D006154 5.3e-08 63.2 180 28.3
ECA246G3042 Erigeron canadensis HOM05D000439 ORTHO05D006154 6.9e-08 62.8 184 28.8
Solyc03g117910.3 Solanum lycopersicum HOM05D000439 ORTHO05D006154 9.1e-08 62.4 180 28.3
CDE02G0348 Ceratophyllum demersum HOM05D000439 ORTHO05D006154 1.2e-07 62.0 178 27.0
HPP92_011666 Vanilla planifolia HOM05D000439 ORTHO05D006154 1.2e-07 62.0 179 29.6
CAN.G47.4 Capsicum annuum HOM05D000439 ORTHO05D006154 1.5e-07 61.6 183 27.3
Nitab4.5_0001216g0050 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.0e-07 61.2 215 28.4
Nitab4.5_0000433g0090 Nicotiana tabacum HOM05D000439 ORTHO05D006154 3.4e-07 60.5 178 27.0
Solyc06g074450.3 Solanum lycopersicum HOM05D000439 ORTHO05D006154 3.4e-07 60.5 170 30.6
SMO239G0115 Selaginella moellendorffii HOM05D000439 ORTHO05D001363 4.5e-07 60.1 162 30.2
BcaB08g35465 Brassica carinata HOM05D000439 ORTHO05D006154 1.0e-06 58.9 185 25.4
Atru.chr6.1963 Acer truncatum HOM05D000439 ORTHO05D006154 2.2e-06 57.8 169 27.8
CAN.G1008.30 Capsicum annuum HOM05D000439 ORTHO05D006154 2.9e-06 57.4 164 30.5
CAN.G919.14 Capsicum annuum HOM05D000439 ORTHO05D006154 2.9e-06 57.4 172 29.1
Nitab4.5_0002540g0130 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.9e-06 57.4 182 27.5
CAN.G564.8 Capsicum annuum HOM05D000439 ORTHO05D006154 3.8e-06 57.0 171 29.2
Peaxi162Scf00091g00051 Petunia axillaris HOM05D000439 ORTHO05D006154 3.8e-06 57.0 184 25.0
SMO367G0775 Selaginella moellendorffii HOM05D000439 ORTHO05D001363 3.8e-06 57.0 155 32.9
Nitab4.5_0004781g0040 Nicotiana tabacum HOM05D000439 ORTHO05D006154 5.0e-06 56.6 182 28.0
PGSC0003DMG400014443 Solanum tuberosum HOM05D000439 ORTHO05D006154 5.0e-06 56.6 183 27.3
Solyc12g042440.2 Solanum lycopersicum HOM05D000439 ORTHO05D006154 6.5e-06 56.2 183 27.3
Sopen12g021430 Solanum pennellii HOM05D000439 ORTHO05D006154 8.5e-06 55.8 183 27.3


User provided reference genes

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