Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 5.4e-207 724.2 383 100.0
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 5.1e-125 451.8 370 70.5
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.4e-90 336.7 367 54.0
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.7e-80 303.9 328 50.9
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 8.6e-80 301.6 312 52.9
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.1e-79 301.2 312 52.6
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.1e-79 301.2 374 48.4
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 5.6e-79 298.9 312 51.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.6e-78 296.2 383 45.4
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 8.1e-78 295.0 312 50.6
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.1e-77 294.7 341 50.1
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 4.0e-77 292.7 384 46.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.2e-77 292.4 308 51.9
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.2e-76 291.2 379 46.2
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.5e-76 290.8 308 51.9
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.5e-76 290.8 312 48.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.5e-76 290.8 384 47.7
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.0e-76 290.4 308 51.9
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.0e-76 290.4 308 51.9
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 5.8e-76 288.9 308 51.0
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 7.5e-76 288.5 314 49.7
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 7.5e-76 288.5 312 50.3
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.3e-75 287.7 313 50.5
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.7e-75 287.3 357 47.1
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.7e-75 287.3 312 50.0
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.7e-75 287.3 322 49.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.9e-75 286.6 372 47.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 3.7e-75 286.2 313 48.9
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.7e-75 286.2 312 50.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 4.9e-75 285.8 310 51.6
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 4.9e-75 285.8 320 48.8
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.4e-75 285.4 380 45.0
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 8.3e-75 285.0 360 47.2
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.4e-74 283.5 361 46.8
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.4e-74 283.5 378 46.8
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 5.4e-74 282.3 312 50.3
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 7.1e-74 282.0 381 45.1
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.1e-74 282.0 314 50.3
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.1e-74 282.0 314 50.3
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.2e-73 281.2 364 45.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.6e-73 280.8 312 49.4
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.6e-73 280.8 332 48.8
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.1e-73 280.4 323 47.7
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.1e-73 280.4 366 45.9
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.7e-73 280.0 370 46.8
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.7e-73 280.0 382 44.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.3e-72 277.7 309 48.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.3e-72 276.9 309 49.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.3e-72 276.9 373 44.5
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 3.9e-72 276.2 352 46.3
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 6.6e-72 275.4 373 44.5
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.1e-71 274.6 361 44.6
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.9e-71 273.9 373 44.2
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-71 273.5 312 49.0
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-71 273.5 312 49.0
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.3e-71 273.1 381 43.6
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.6e-71 272.3 327 47.4
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 7.3e-71 271.9 368 44.8
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.2e-70 271.2 316 48.1
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.2e-70 271.2 369 44.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.6e-70 269.6 357 44.5
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.6e-70 269.6 351 47.0
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.6e-70 269.6 351 47.0
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.2e-70 268.9 257 55.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 8.1e-70 268.5 298 48.3
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 8.1e-70 268.5 379 43.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.3e-69 266.9 362 43.4
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.1e-69 266.5 326 47.2
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 3.1e-69 266.5 343 44.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.1e-69 266.5 353 45.6
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 8.9e-69 265.0 336 44.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.5e-68 264.2 387 42.6
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.0e-68 263.8 377 43.2
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.6e-68 263.5 308 47.7
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.4e-68 263.1 322 47.8
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 7.6e-68 261.9 379 42.5
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 9.9e-68 261.5 287 49.5
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.3e-67 261.2 302 48.0
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.4e-67 258.5 306 48.7
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.1e-66 258.1 371 43.4
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.1e-66 258.1 375 42.9
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.4e-66 257.7 364 44.8
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.4e-66 257.7 371 42.9
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.4e-66 257.7 376 41.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.4e-66 256.9 376 41.8
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 5.4e-66 255.8 383 42.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 5.4e-66 255.8 376 42.3
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 7.1e-66 255.4 368 43.5
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 9.2e-66 255.0 376 41.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 9.2e-66 255.0 382 42.7
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.6e-65 252.7 370 41.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.0e-65 252.3 371 42.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.1e-63 248.1 313 46.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.9e-63 247.3 352 43.8
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.1e-62 243.8 138 95.7
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.8e-61 240.7 369 40.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 4.0e-61 239.6 393 39.4
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 5.2e-61 239.2 393 39.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.2e-59 233.8 252 54.0
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.1e-58 231.5 316 43.7
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.1e-58 231.5 150 84.0
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.9e-58 230.7 211 56.4
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.4e-58 230.3 150 83.3
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 3.2e-58 229.9 150 83.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 3.2e-58 229.9 150 83.3
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 9.3e-58 228.4 403 40.0
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 9.3e-58 228.4 150 82.7
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.6e-57 227.6 142 86.6
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-57 226.9 271 46.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.6e-54 216.5 261 45.2
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 6.9e-53 212.2 373 39.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 9.9e-52 208.4 304 37.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 9.3e-50 201.8 318 38.1
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.7e-48 197.6 200 52.5
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.4e-44 183.3 297 35.7
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.4e-42 177.2 369 36.3
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.0e-40 170.2 148 57.4
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 6.2e-38 162.5 147 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.0e-36 157.5 353 31.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.9e-35 153.7 207 46.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 2.7e-33 147.1 258 33.3
Zm00001eb400440 Zea mays HOM05D004772 ORTHO05D037858 2.6e-28 130.6 72 98.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.4e-26 124.8 239 38.5
Zm00001eb057990 Zea mays HOM05D000462 ORTHO05D037858 4.2e-26 123.2 72 94.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 9.7e-23 112.1 176 36.9
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 4.5e-20 103.2 99 51.5
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 2.5e-18 97.4 236 27.5
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.4e-16 91.7 291 25.4
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.3e-16 90.9 176 36.4
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.0e-16 90.5 92 50.0
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 9.1e-13 79.0 292 27.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 7.9e-09 65.9 130 34.6
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.8e-08 64.7 105 37.1
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 5.7e-07 59.7 69 49.3


User provided reference genes

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