Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 2573.1 1275 100.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1968.0 1265 76.0
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1407.1 1314 54.3
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1406.3 1308 55.0
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1401.0 1306 55.0
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1373.2 1309 53.6
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1355.1 1303 52.5
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1353.6 1253 54.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1342.4 1298 53.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1340.1 1298 53.5
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1337.8 1300 53.2
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1335.1 1297 53.2
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1316.2 1296 52.5
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1314.3 1297 52.0
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1314.3 1295 52.9
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1307.7 1277 53.3
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1305.0 1288 51.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1305.0 1297 51.3
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1304.7 1327 51.5
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1302.7 1297 51.0
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1299.6 1289 51.7
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1295.8 1260 52.4
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1294.6 1309 52.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1290.4 1294 51.1
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1289.6 1294 51.9
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1289.2 1295 51.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1288.5 1290 52.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1293 51.8
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1287.3 1294 51.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1283.9 1299 51.3
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1281.9 1304 51.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1281.2 1292 50.7
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1274.6 1299 50.1
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1272.7 1284 50.9
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1272.3 1299 50.6
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1271.5 1293 50.4
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1263.4 1388 48.7
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1263.4 1286 50.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1261.1 1347 49.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1256.9 1297 49.8
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1256.5 1300 51.0
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1255.0 1300 50.0
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1255.0 1289 50.6
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1253.8 1297 49.7
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1252.3 1293 50.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1250.3 1292 50.4
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1249.6 1297 51.9
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1247.3 1294 50.0
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1243.8 1298 49.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1239.6 1300 49.7
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1238.4 1291 49.7
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1237.2 1303 49.5
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1237.2 1286 50.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1236.9 1293 49.8
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1235.7 1308 48.3
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1233.8 1362 48.9
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1232.6 1315 49.5
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1231.5 1299 49.7
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1229.5 1298 50.4
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1228.4 1305 49.7
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1227.6 1359 49.4
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1227.6 1298 49.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1226.5 1304 49.7
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1226.1 1293 48.9
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1226.1 1319 50.7
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1225.7 1292 49.3
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1225.3 1242 51.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1223.4 1295 49.8
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1221.1 1298 48.5
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1219.9 1295 49.7
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1218.4 1302 48.8
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1217.6 1421 47.0
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1217.2 1197 52.3
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1213.7 1285 49.4
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1213.0 1295 48.6
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1212.2 1295 48.6
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1211.8 1295 48.3
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1206.8 1294 48.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1200.7 1111 55.5
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1198.3 1284 48.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1197.2 1296 48.8
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1191.8 1304 48.4
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1179.9 1287 48.8
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1178.7 1310 47.9
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1177.5 1115 54.3
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1166.8 1296 47.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1152.1 1096 53.9
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1147.1 1261 47.6
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1142.9 1155 51.7
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1141.7 1282 47.8
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1134.8 1117 52.4
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1132.9 1072 54.3
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1099.3 1395 44.4
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1096.6 1293 45.4
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1095.1 1301 45.2
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1094.0 1301 45.5
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1091.3 1301 45.9
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1088.6 1209 48.3
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 4.4e-311 1071.6 1411 43.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-302 1042.0 1086 50.8
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.9e-297 1025.8 1123 49.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.1e-292 1009.6 1162 47.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 9.4e-256 887.9 1338 37.9
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 5.3e-243 845.5 1351 37.3
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 8.5e-233 811.6 1180 39.7
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 6.3e-228 795.4 922 46.1
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 3.2e-224 783.1 648 58.5
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.7e-223 779.2 846 49.5
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.1e-203 713.0 923 42.6
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.6e-189 667.2 756 48.3
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 5.1e-161 573.2 1286 30.6
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.5e-132 476.5 566 45.9
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.1e-130 471.5 378 60.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.4e-129 468.8 350 66.6
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 7.4e-128 463.0 658 39.7
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 4.5e-117 427.2 505 47.3
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 9.8e-96 356.3 1100 27.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.7e-93 348.2 323 53.9
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 3.7e-87 327.8 466 41.0
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 6.6e-84 317.0 222 65.8
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.9e-83 315.5 1033 25.3
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 8.4e-71 273.5 207 61.4
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.1e-70 273.1 213 60.6
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 1.2e-69 269.6 207 60.9
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.0e-65 254.6 422 37.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-62 246.1 189 57.7
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.9e-62 245.7 426 36.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 4.0e-57 228.0 1146 22.7
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.5e-56 224.6 171 62.0
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.2e-54 218.0 147 65.3
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.5e-51 209.5 694 25.8
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 3.4e-48 198.4 287 38.3
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.3e-43 181.8 168 51.2
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-34 153.3 121 57.9
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.1e-33 148.3 143 55.2
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.1e-33 148.3 112 61.6
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.3e-33 147.9 214 36.0
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.2e-31 142.5 116 62.1
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.5e-31 140.6 210 36.2
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 3.1e-25 122.1 117 51.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 3.4e-24 118.6 113 56.6
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 3.4e-24 118.6 181 37.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.2e-23 115.9 204 36.8
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.2e-22 112.1 85 63.5
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 4.4e-19 101.7 128 40.6
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 1.3e-18 100.1 232 32.3
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.8e-18 98.2 79 63.3
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 3.1e-17 95.5 142 34.5
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 8.5e-15 87.4 80 53.8
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 8.5e-15 87.4 73 53.4
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 6.1e-13 81.3 126 41.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.0e-12 80.5 167 33.5
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 6.7e-12 77.8 58 56.9
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 2.8e-10 72.4 55 54.5
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 4.8e-10 71.6 103 44.7
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 2.0e-08 66.2 79 43.0
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.3e-07 63.5 207 28.0
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.2e-07 62.8 73 47.9
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 2.9e-07 62.4 59 59.3
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 7.2e-06 57.8 41 58.5


User provided reference genes

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