Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.3e-99 365.5 180 100.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 9.0e-96 353.6 180 97.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.8e-86 321.6 182 88.5
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.8e-65 252.3 185 70.8
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.4e-64 249.2 185 71.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.4e-64 249.2 186 70.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.1e-64 248.8 186 69.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.1e-64 248.8 183 67.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.1e-64 248.8 185 70.8
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 9.1e-64 247.3 183 68.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-63 246.9 186 68.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.5e-63 246.5 186 67.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.0e-63 246.1 186 67.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.0e-63 246.1 185 70.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.6e-63 245.7 180 70.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.4e-63 245.4 185 70.3
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.4e-63 245.4 185 70.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.5e-63 245.0 183 68.3
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.5e-63 245.0 186 69.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 5.9e-63 244.6 178 69.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.9e-63 244.6 179 70.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-62 243.4 190 66.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.7e-62 243.0 168 73.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.2e-62 242.7 168 73.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.2e-62 242.7 183 69.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.9e-62 242.3 187 66.8
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.8e-62 241.9 190 65.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 6.5e-62 241.1 184 67.9
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.5e-62 240.7 190 66.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.5e-62 240.7 186 67.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.1e-61 240.4 186 69.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.4e-61 240.0 186 67.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.4e-61 240.0 186 67.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.4e-61 240.0 186 67.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.4e-61 240.0 186 67.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.9e-61 239.6 185 67.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.2e-61 238.8 184 65.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.2e-61 238.8 189 65.1
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.5e-61 238.0 184 66.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.2e-61 237.7 184 66.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.1e-60 236.1 187 66.8
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.1e-60 236.1 186 68.3
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.7e-60 235.7 187 65.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.7e-60 235.7 186 66.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.6e-60 235.3 174 66.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 4.6e-60 235.0 197 62.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.1e-60 234.6 178 68.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.9e-60 234.2 182 66.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.9e-60 234.2 188 64.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-59 233.4 184 65.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-59 233.4 161 73.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.4e-59 233.4 163 74.2
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.4e-59 233.4 162 71.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.8e-59 233.0 187 66.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 3.0e-59 232.3 170 67.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-59 232.3 160 73.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.9e-59 231.9 164 72.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.1e-59 231.5 188 64.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 5.1e-59 231.5 188 66.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 6.7e-59 231.1 186 64.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.1e-58 230.3 165 69.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.5e-58 229.9 185 66.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.5e-58 229.9 185 63.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.5e-58 229.9 164 69.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.0e-58 229.6 186 63.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.3e-58 228.8 192 64.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.3e-58 228.8 191 63.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.3e-58 228.8 190 65.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.3e-58 228.8 190 65.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.4e-58 228.4 161 70.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 5.7e-58 228.0 176 68.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.4e-58 227.6 187 63.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 9.7e-58 227.3 189 66.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-57 226.5 188 64.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-57 226.5 164 71.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.7e-57 226.5 187 64.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.7e-57 226.5 184 64.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.2e-57 226.1 174 67.8
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.2e-57 226.1 186 62.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.8e-57 225.7 183 64.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.7e-57 225.3 184 64.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.3e-57 224.6 188 64.4
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 8.2e-57 224.2 186 64.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 8.2e-57 224.2 163 73.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.1e-56 223.8 164 69.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.1e-56 223.8 161 68.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-56 223.4 182 65.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-56 223.4 177 62.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.4e-56 223.4 164 70.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.4e-56 223.4 185 62.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.4e-56 222.6 165 68.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.4e-56 222.6 165 67.9
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.4e-56 222.6 161 70.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.4e-56 222.6 161 69.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.1e-56 222.2 162 67.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-56 222.2 164 67.7
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.1e-56 222.2 159 70.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.1e-56 221.9 162 70.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.1e-56 221.9 163 68.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.3e-56 221.5 164 67.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.3e-56 221.5 198 62.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.9e-56 221.1 170 65.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.9e-56 221.1 177 65.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.2e-55 220.3 142 76.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-55 220.3 164 67.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.6e-55 219.2 168 65.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.4e-55 218.8 199 60.3
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.3e-54 216.9 162 66.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.7e-54 216.5 179 59.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-54 216.5 162 64.8
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.0e-54 214.9 164 67.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 8.5e-54 214.2 174 64.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-53 213.8 168 66.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.9e-53 213.0 162 67.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.5e-53 212.6 162 63.6
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.5e-53 212.6 161 66.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 5.5e-53 211.5 162 64.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 7.2e-53 211.1 161 62.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 7.2e-53 211.1 162 67.9
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-52 210.3 162 63.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.6e-52 209.9 164 61.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.6e-52 209.9 239 50.6
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-52 209.5 134 75.4
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.6e-52 208.8 161 62.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 7.9e-52 207.6 162 63.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-51 206.8 160 68.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-51 205.7 163 62.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-51 205.7 163 62.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.9e-51 205.3 181 59.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 5.2e-51 204.9 162 62.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.1e-50 203.8 163 63.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.3e-50 202.2 163 62.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-49 200.3 163 62.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.3e-49 200.3 163 62.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.3e-49 200.3 163 61.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-48 196.8 184 59.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 8.8e-43 177.6 173 53.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.8e-41 172.6 103 80.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.8e-40 169.9 103 79.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.8e-40 169.9 186 50.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 7.2e-37 157.9 135 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 4.4e-34 148.7 225 42.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.1e-32 144.1 134 54.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.2e-27 125.2 132 48.5
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.4e-26 122.1 70 84.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 9.8e-26 120.9 65 87.7
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.2e-25 119.8 64 84.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.8e-25 119.4 65 86.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-24 115.9 65 83.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.6e-21 105.1 153 41.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.5e-18 97.1 56 82.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.0e-18 96.7 140 45.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 9.2e-16 87.8 88 52.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.1e-13 80.9 41 90.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 9.2e-08 61.2 139 36.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 6.6e-06 55.1 154 31.8


User provided reference genes

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