Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.3e-185 652.9 337 100.0
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 3.1e-150 535.4 338 83.4
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.2e-114 417.2 292 72.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 6.8e-113 411.4 279 73.5
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 6.8e-113 411.4 288 71.5
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.2e-112 410.6 279 74.9
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 7.5e-112 407.9 308 67.5
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.2e-111 406.4 346 62.4
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 2.9e-111 406.0 335 63.9
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 4.9e-111 405.2 337 65.3
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.1e-110 404.1 332 64.2
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.1e-110 404.1 283 70.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 2.4e-110 402.9 296 68.6
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 5.4e-110 401.7 296 67.9
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 5.4e-110 401.7 323 66.6
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 7.0e-110 401.4 279 72.8
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 9.2e-110 401.0 278 71.2
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.6e-109 400.2 320 64.1
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.6e-109 400.2 284 71.5
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.0e-109 399.8 314 66.9
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 2.0e-109 399.8 324 64.8
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 2.0e-109 399.8 336 62.2
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 2.7e-109 399.4 279 72.0
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 2.7e-109 399.4 279 72.0
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 2.7e-109 399.4 335 62.4
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 3.5e-109 399.1 279 71.3
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 3.5e-109 399.1 323 64.4
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.6e-109 398.7 291 70.1
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 4.6e-109 398.7 278 71.2
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 4.6e-109 398.7 298 68.1
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 4.6e-109 398.7 342 63.7
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 5.9e-109 398.3 326 64.1
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 5.9e-109 398.3 327 64.2
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 7.8e-109 397.9 291 69.8
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 7.8e-109 397.9 338 62.4
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.3e-108 397.1 279 71.7
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 2.3e-108 396.4 278 70.9
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.9e-108 396.0 320 64.7
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.9e-108 396.0 314 64.6
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 2.9e-108 396.0 297 68.0
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 3.9e-108 395.6 293 69.3
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 3.9e-108 395.6 279 70.6
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.9e-107 393.3 318 64.2
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.5e-107 392.9 279 71.7
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.5e-107 392.9 279 71.3
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.5e-107 392.9 280 70.7
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 3.3e-107 392.5 324 64.5
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 3.3e-107 392.5 297 67.7
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 2.1e-106 389.8 279 69.5
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 3.6e-106 389.0 294 67.3
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 4.7e-106 388.7 279 69.5
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 4.7e-106 388.7 336 61.0
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 6.2e-106 388.3 279 68.1
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 8.0e-106 387.9 280 70.4
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 8.0e-106 387.9 279 69.9
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.0e-105 387.5 307 65.5
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.3e-105 386.3 333 61.3
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 5.2e-105 385.2 317 63.4
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 5.2e-105 385.2 279 68.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.5e-104 383.6 280 67.9
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.5e-104 383.6 308 64.9
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.6e-104 382.9 320 63.1
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 2.2e-103 379.8 279 68.1
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.9e-103 379.4 313 62.6
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.7e-103 379.0 324 61.7
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 8.3e-103 377.9 294 65.0
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 8.3e-103 377.9 294 65.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 8.3e-103 377.9 320 61.6
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.9e-102 376.7 279 67.4
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.9e-102 376.7 279 67.4
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.9e-102 376.7 279 67.4
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.9e-102 376.7 303 65.0
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.9e-102 376.7 261 72.8
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 7.0e-102 374.8 279 66.7
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.2e-101 374.0 313 62.0
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.5e-101 372.5 314 61.8
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.1e-99 367.5 266 68.4
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 5.6e-99 365.2 308 63.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 4.0e-97 359.0 314 59.2
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.5e-96 357.1 263 68.8
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 7.5e-96 354.8 258 69.4
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 6.4e-95 351.7 266 66.5
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.1e-94 348.2 350 56.6
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 8.1e-90 334.7 428 46.0
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 9.9e-88 327.8 332 54.8
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 6.4e-87 325.1 512 41.0
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.1e-85 320.1 297 55.6
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 2.3e-84 316.6 277 58.8
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.0e-84 316.2 507 40.0
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 7.3e-83 311.6 286 57.3
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 9.6e-83 311.2 212 73.1
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.6e-82 309.3 287 56.1
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 6.2e-82 308.5 226 66.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.4e-81 307.4 296 57.1
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 2.4e-81 306.6 264 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 5.2e-81 305.4 278 56.8
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.2e-81 305.4 226 65.9
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 2.6e-80 303.1 352 50.3
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.3e-79 300.8 240 63.8
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.3e-76 290.8 248 61.7
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 9.0e-73 278.1 181 75.1
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 5.6e-67 258.8 318 50.0
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 3.8e-55 219.5 301 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.5e-54 216.9 199 56.8
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.1e-51 208.0 133 75.2
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 8.2e-50 201.8 175 58.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.4e-49 201.1 142 66.2
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 5.3e-49 199.1 196 52.0
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 3.8e-47 193.0 300 41.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.8e-44 184.1 257 45.9
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 4.3e-43 179.5 192 52.6
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 3.7e-42 176.4 228 46.9
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.6e-32 143.7 175 45.7
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.0e-27 127.5 169 42.6
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 1.2e-24 118.2 97 59.8
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.6e-24 117.9 109 56.9
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.5e-24 116.7 107 57.0
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.7e-23 114.4 91 64.8
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.4e-17 94.7 84 58.3
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.0e-15 88.6 53 81.1
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.3e-15 88.2 54 79.6
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.9e-14 84.3 77 54.5
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.2e-11 75.1 155 32.3
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.2e-11 75.1 47 72.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 6.3e-10 69.3 106 43.4
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.1e-09 67.0 58 63.8
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.1e-09 66.6 58 63.8
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.6e-08 64.7 58 62.1


User provided reference genes

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