Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 6.0e-76 287.3 136 100.0
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.3e-59 233.0 114 95.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 6.4e-54 214.2 113 86.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.4e-46 187.6 114 72.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.1e-45 186.8 114 75.4
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 4.2e-45 184.9 114 73.7
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 5.4e-45 184.5 114 73.7
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 7.1e-45 184.1 114 71.1
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.2e-44 183.3 114 71.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.6e-44 183.0 114 72.8
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.5e-44 181.8 114 73.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 4.6e-44 181.4 114 72.8
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.6e-44 181.4 114 71.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 6.0e-44 181.0 114 73.7
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.0e-44 181.0 114 71.1
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 7.9e-44 180.6 114 71.9
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.3e-43 179.1 114 71.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.9e-43 178.3 114 71.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 5.1e-43 177.9 114 72.8
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 6.7e-43 177.6 114 71.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 8.7e-43 177.2 114 71.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.1e-42 176.8 114 68.4
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.9e-42 176.0 114 71.1
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.9e-42 176.0 117 70.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 2.5e-42 175.6 114 71.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 4.3e-42 174.9 114 71.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 4.3e-42 174.9 114 68.4
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.7e-41 171.8 114 67.5
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 8.1e-41 170.6 114 66.7
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.1e-40 170.2 114 68.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.8e-40 169.5 114 66.7
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.8e-40 169.5 114 65.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.4e-40 169.1 114 66.7
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 4.0e-40 168.3 114 69.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.0e-40 168.3 114 69.3
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 5.3e-40 167.9 114 67.5
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.9e-40 167.5 114 66.7
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 6.9e-40 167.5 114 64.9
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.2e-39 166.8 115 64.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.2e-39 166.8 115 69.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.5e-39 166.4 114 64.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.5e-39 166.4 114 66.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.0e-39 166.0 114 69.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.0e-39 166.0 114 69.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.6e-39 165.6 114 67.5
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.6e-39 165.6 114 67.5
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.6e-39 165.6 114 63.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 3.4e-39 165.2 114 65.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.5e-39 164.9 115 64.3
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.6e-39 164.1 114 67.5
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 7.6e-39 164.1 115 65.2
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 7.6e-39 164.1 114 64.0
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.9e-39 163.7 119 63.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 9.9e-39 163.7 115 64.3
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-38 163.3 115 63.5
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.3e-38 163.3 114 65.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-38 162.9 115 64.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 2.2e-38 162.5 114 61.4
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.2e-38 162.5 114 65.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.2e-38 162.5 114 66.7
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.2e-38 162.5 115 63.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.9e-38 162.2 114 66.7
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 4.9e-38 161.4 116 67.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.4e-38 161.0 114 60.5
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.1e-37 160.2 114 60.5
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.1e-37 160.2 116 63.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.1e-37 160.2 114 63.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-37 160.2 114 64.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.1e-37 160.2 114 64.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.1e-37 160.2 114 63.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.4e-37 159.8 119 62.2
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.9e-37 159.5 114 63.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.2e-37 158.3 114 59.6
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.2e-37 158.3 114 60.5
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 9.3e-37 157.1 114 60.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.2e-36 156.8 115 62.6
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.6e-36 156.4 108 67.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.1e-36 156.0 114 65.8
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 2.7e-36 155.6 113 64.6
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.7e-36 155.6 114 65.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.5e-36 155.2 114 64.0
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.5e-36 155.2 109 67.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.0e-36 154.5 114 64.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 7.9e-36 154.1 114 64.0
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 7.9e-36 154.1 114 65.8
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.0e-35 153.7 114 61.4
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.0e-35 153.7 114 62.3
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.0e-35 153.7 115 63.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.8e-35 152.9 114 62.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 3.0e-35 152.1 110 65.5
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.9e-35 151.8 114 62.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.1e-35 151.4 114 63.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.1e-35 151.4 114 61.4
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 7.4e-34 147.5 114 56.1
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 4.8e-33 144.8 116 57.8
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.3e-32 141.4 114 55.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 9.0e-32 140.6 69 97.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.5e-31 139.8 108 61.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.4e-31 138.7 114 57.0
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 3.4e-31 138.7 94 69.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.5e-31 138.3 114 55.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 4.5e-31 138.3 114 54.4
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.5e-31 138.3 113 58.4
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.0e-30 137.1 114 55.3
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.7e-30 136.3 114 58.8
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.7e-30 136.3 114 57.9
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 4.9e-30 134.8 114 53.5
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 8.4e-30 134.0 114 55.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 8.4e-30 134.0 114 55.3
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.4e-29 133.3 114 57.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.1e-29 131.0 114 53.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-28 130.2 114 53.5
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.7e-28 129.0 114 52.6
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.9e-26 122.9 114 53.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.5e-26 122.5 114 53.5
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 4.3e-26 121.7 112 52.7
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.7e-25 118.6 114 52.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-22 110.2 114 51.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 6.5e-22 107.8 66 68.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.1e-21 107.1 116 45.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.3e-19 99.4 70 64.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.1e-19 98.2 90 48.9
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-18 97.1 114 44.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.3e-18 95.1 62 67.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.3e-18 95.1 68 61.8
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 9.7e-18 94.0 105 45.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.4e-16 89.4 75 57.3
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 8.5e-06 54.3 26 96.2


User provided reference genes

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