Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.7e-312 1073.5 534 100.0
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.5e-279 965.7 505 93.7
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.0e-232 810.1 525 74.3
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 3.9e-232 808.1 526 73.0
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 6.7e-232 807.4 525 73.9
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.1e-231 806.6 525 72.6
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 4.4e-231 804.7 528 71.6
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 7.7e-228 793.9 522 72.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.0e-227 793.5 528 71.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 4.7e-225 784.6 531 70.2
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 6.1e-225 784.3 559 68.9
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.0e-225 783.9 524 70.6
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.4e-224 783.1 527 70.4
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.8e-224 782.7 527 71.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.0e-224 781.6 529 70.5
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 5.2e-224 781.2 526 70.3
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 2.0e-223 779.2 527 70.8
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.6e-223 778.9 556 67.6
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 7.5e-223 777.3 528 69.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.3e-222 776.5 524 70.2
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.7e-222 776.2 534 68.7
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.8e-222 774.6 539 69.0
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 8.2e-222 773.9 568 66.0
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 7.0e-221 770.8 528 69.1
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 9.1e-221 770.4 500 74.6
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 3.5e-220 768.5 530 69.8
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.9e-219 765.4 529 69.4
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 5.0e-219 764.6 529 67.5
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.1e-218 763.5 529 70.1
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.5e-218 763.1 528 68.8
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 5.5e-218 761.1 528 68.8
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.2e-217 760.0 534 68.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.6e-217 759.6 527 69.4
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.6e-217 759.6 535 68.2
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 2.7e-217 758.8 526 67.3
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 4.0e-216 755.0 524 68.9
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.2e-216 754.6 530 69.1
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.7e-214 749.6 533 67.0
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 2.2e-214 749.2 529 68.2
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.1e-213 746.9 534 68.2
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 3.8e-211 738.4 544 67.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 3.3e-210 735.3 528 67.2
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.2e-209 733.4 527 66.4
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 4.0e-208 728.4 533 67.0
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 5.2e-208 728.0 533 66.4
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 8.9e-208 727.2 543 65.6
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.5e-207 726.5 536 66.0
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 5.7e-207 724.5 525 65.7
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 9.8e-207 723.8 542 64.0
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 4.9e-206 721.5 529 66.2
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.6e-204 716.5 528 66.1
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 1.0e-203 713.8 560 63.9
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 3.3e-202 708.8 524 65.6
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 9.5e-202 707.2 524 65.3
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 2.3e-200 702.6 527 63.0
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 3.0e-200 702.2 524 64.5
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 2.6e-199 699.1 544 63.2
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 3.4e-199 698.7 524 64.7
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 7.5e-199 697.6 521 64.5
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.8e-199 697.2 524 64.7
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 2.2e-198 696.0 488 67.6
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 8.3e-198 694.1 524 64.7
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.1e-197 693.7 528 65.0
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.4e-197 693.3 530 63.2
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 4.7e-193 678.3 532 62.6
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.4e-192 676.8 524 63.2
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.4e-192 676.8 524 63.2
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.8e-192 676.4 552 60.3
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.3e-192 676.0 524 63.2
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 4.0e-192 675.2 524 63.2
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.2e-189 665.6 549 61.4
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.6e-188 663.3 524 62.0
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.6e-188 663.3 528 62.1
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 3.0e-187 659.1 480 66.5
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 8.6e-187 657.5 532 61.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 9.5e-186 654.1 609 56.3
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.9e-181 639.8 526 62.0
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 2.7e-180 636.0 527 58.8
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 6.6e-179 631.3 508 61.6
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.4e-175 618.6 526 56.5
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 5.8e-175 618.2 524 56.3
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 9.9e-175 617.5 525 59.4
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 5.4e-173 611.7 525 59.2
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 6.0e-172 608.2 531 54.4
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 6.6e-171 604.7 539 58.1
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.5e-170 602.8 585 53.7
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 4.7e-169 598.6 538 57.4
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 9.0e-160 567.8 527 53.9
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.9e-157 560.1 522 53.6
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 8.7e-155 551.2 626 49.2
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 4.5e-143 512.3 525 48.2
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 9.3e-141 504.6 317 73.8
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.8e-139 500.4 300 76.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.5e-138 496.5 554 49.6
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 6.7e-131 471.9 299 74.6
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 4.8e-129 465.7 301 70.8
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 6.7e-115 418.7 557 44.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.7e-113 412.9 557 42.9
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.6e-111 406.8 446 50.7
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.0e-107 394.8 232 78.9
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.5e-98 364.4 299 61.5
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 5.7e-98 362.5 634 33.9
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 3.1e-83 313.5 486 37.0
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.2e-79 301.6 370 46.5
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 2.5e-69 267.3 579 33.5
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 7.1e-64 249.2 211 59.2
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 9.6e-61 238.8 197 59.9
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.2e-55 221.9 169 63.3
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-54 218.4 209 53.6
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 2.1e-52 211.1 209 52.2
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.0e-50 204.5 103 87.4
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.8e-50 203.0 208 49.5
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.9e-49 200.7 208 49.0
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.4e-48 198.4 208 48.6
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.5e-33 146.4 85 76.5
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 7.9e-31 139.4 133 52.6
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.5e-29 134.4 187 39.0
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.4e-29 132.9 202 38.1
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.9e-18 96.7 109 53.2
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 6.1e-15 86.7 47 80.9
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 9.1e-11 72.8 44 75.0
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.7e-09 68.6 31 90.3
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 90.3
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 90.3
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.7e-09 68.6 31 90.3
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 5.0e-09 67.0 31 87.1
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 1.6e-07 62.0 56 51.8
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 4.7e-07 60.5 52 53.8
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 6.1e-07 60.1 50 56.0


User provided reference genes

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