Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 1.9e-187 659.1 350 100.0
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 7.7e-43 178.7 141 66.7
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 1.0e-42 178.3 141 66.0
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 2.9e-42 176.8 145 63.4
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 4.2e-41 172.9 118 72.0
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 7.2e-41 172.2 123 71.5
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.2e-40 171.4 114 74.6
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 4.7e-40 169.5 112 74.1
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 6.1e-40 169.1 117 70.1
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 6.1e-40 169.1 121 71.1
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 6.1e-40 169.1 128 68.0
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 1.4e-39 167.9 121 71.1
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 1.4e-39 167.9 125 67.2
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.8e-39 167.5 117 70.1
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 1.8e-39 167.5 118 70.3
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 1.8e-39 167.5 131 68.7
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.8e-39 167.5 109 75.2
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 3.0e-39 166.8 136 64.7
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 3.0e-39 166.8 118 68.6
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 3.9e-39 166.4 102 76.5
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 5.2e-39 166.0 103 75.7
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 6.7e-39 165.6 98 80.6
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 6.7e-39 165.6 98 80.6
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 8.8e-39 165.2 103 74.8
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 8.8e-39 165.2 161 57.1
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 8.8e-39 165.2 137 64.2
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 1.1e-38 164.9 106 74.5
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 3.3e-38 163.3 119 69.7
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 7.4e-38 162.2 112 68.8
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 9.7e-38 161.8 162 57.4
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 1.3e-37 161.4 118 66.1
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 1.7e-37 161.0 103 72.8
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.7e-37 161.0 128 65.6
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 2.2e-37 160.6 98 79.6
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 2.2e-37 160.6 103 73.8
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 2.8e-37 160.2 102 71.6
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 2.8e-37 160.2 104 73.1
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.8e-37 160.2 104 73.1
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.8e-37 160.2 104 73.1
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 3.7e-37 159.8 126 65.1
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 3.7e-37 159.8 93 80.6
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.7e-37 159.8 102 71.6
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.7e-37 159.8 102 71.6
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 4.8e-37 159.5 102 72.5
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 4.8e-37 159.5 102 72.5
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 6.3e-37 159.1 133 63.2
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 6.3e-37 159.1 102 72.5
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 6.3e-37 159.1 116 68.1
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 6.3e-37 159.1 135 62.2
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 8.2e-37 158.7 103 69.9
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 1.4e-36 157.9 102 71.6
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.4e-36 157.9 102 71.6
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.4e-36 157.9 92 80.4
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 1.4e-36 157.9 102 70.6
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.4e-36 157.9 93 79.6
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 1.4e-36 157.9 113 69.0
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 1.4e-36 157.9 116 66.4
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 1.8e-36 157.5 102 71.6
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.8e-36 157.5 81 90.1
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-36 157.5 104 72.1
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 1.8e-36 157.5 108 70.4
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.8e-36 157.5 129 62.8
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 2.4e-36 157.1 143 55.9
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 2.4e-36 157.1 137 58.4
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 2.4e-36 157.1 158 55.7
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 3.1e-36 156.8 105 74.3
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.1e-36 156.8 114 69.3
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 3.1e-36 156.8 124 62.9
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 3.1e-36 156.8 102 70.6
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.1e-36 156.4 102 69.6
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 5.3e-36 156.0 103 70.9
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 5.3e-36 156.0 92 78.3
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 5.3e-36 156.0 129 62.0
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 7.0e-36 155.6 129 62.0
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 9.1e-36 155.2 124 61.3
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 1.2e-35 154.8 139 56.8
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.2e-35 154.8 101 74.3
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 1.6e-35 154.5 91 76.9
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 2.0e-35 154.1 144 56.9
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 3.5e-35 153.3 145 57.2
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 4.5e-35 152.9 92 76.1
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.0e-34 151.8 105 66.7
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 2.2e-34 150.6 92 71.7
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 6.5e-34 149.1 109 67.9
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 1.9e-33 147.5 103 67.0
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 4.2e-33 146.4 93 74.2
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 1.6e-32 144.4 142 54.2
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 2.7e-32 143.7 95 72.6
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 2.7e-32 143.7 81 79.0
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 3.6e-32 143.3 112 59.8
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 4.7e-32 142.9 81 80.2
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 4.7e-32 142.9 93 66.7
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 1.8e-31 141.0 81 77.8
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 2.6e-30 137.1 107 66.4
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 3.4e-30 136.7 138 58.7
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 3.4e-30 136.7 85 69.4
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 3.4e-30 136.7 135 54.8
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 4.4e-30 136.3 115 60.0
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 7.5e-30 135.6 81 72.8
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 3.7e-29 133.3 162 47.5
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 3.5e-27 126.7 102 61.8
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 7.7e-27 125.6 115 57.4
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 2.0e-22 110.9 154 43.5
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 3.4e-22 110.2 127 50.4
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 1.7e-21 107.8 90 63.3
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 2.8e-21 107.1 122 50.8
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 5.4e-20 102.8 87 64.4
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 7.0e-20 102.4 60 78.3
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.3e-18 97.4 158 40.5
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 2.5e-17 94.0 82 61.0
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 7.2e-17 92.4 96 53.1
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.1e-12 78.6 85 45.9
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 8.0e-08 62.4 41 68.3


User provided reference genes

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