Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 2.9e-60 235.0 114 100.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.8e-50 201.8 106 93.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 1.0e-49 199.9 106 92.5
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.8e-42 175.3 106 80.2
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 8.1e-34 147.1 106 68.9
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 5.2e-33 144.4 106 66.0
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 5.2e-33 144.4 106 67.0
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 8.9e-33 143.7 106 67.9
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.5e-32 142.9 106 66.0
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.5e-32 142.9 106 66.0
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.5e-32 142.9 106 67.0
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.0e-32 142.5 105 66.7
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.6e-32 142.1 106 65.1
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 9.9e-32 140.2 111 60.4
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 9.9e-32 140.2 106 65.1
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 9.9e-32 140.2 106 64.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.3e-31 139.8 106 64.2
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.7e-31 139.4 106 63.2
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.7e-31 139.4 106 65.1
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 2.2e-31 139.0 106 64.2
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 2.2e-31 139.0 106 63.2
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 2.9e-31 138.7 106 60.4
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 4.9e-31 137.9 106 63.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 4.9e-31 137.9 105 64.8
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 4.9e-31 137.9 105 63.8
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.4e-31 137.5 106 63.2
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.1e-30 136.7 106 62.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.4e-30 136.3 106 62.3
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.4e-30 136.3 106 63.2
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.4e-30 136.3 106 61.3
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.4e-30 136.3 106 62.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.9e-30 136.0 106 62.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-30 136.0 106 62.3
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-30 136.0 106 62.3
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.9e-30 136.0 105 66.7
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.9e-30 136.0 105 66.7
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.4e-30 135.6 106 61.3
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.2e-30 135.2 106 63.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.2e-30 135.2 106 62.3
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.2e-30 135.2 106 61.3
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.1e-30 134.8 106 63.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.1e-30 134.8 106 61.3
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 4.1e-30 134.8 106 61.3
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 7.1e-30 134.0 106 62.3
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.6e-29 132.9 106 62.3
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.6e-29 132.9 106 62.3
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.6e-29 132.9 106 61.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.6e-29 132.9 106 63.2
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.1e-29 132.5 106 61.3
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.7e-29 132.1 106 62.3
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.7e-29 132.1 106 60.4
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.7e-29 132.1 106 62.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.5e-29 131.7 99 60.6
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.5e-29 131.7 106 60.4
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.5e-29 131.7 106 60.4
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.6e-29 131.3 106 57.5
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 4.6e-29 131.3 106 61.3
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.6e-29 131.3 105 60.0
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 7.8e-29 130.6 106 60.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 7.8e-29 130.6 106 60.4
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 7.8e-29 130.6 106 59.4
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.0e-28 130.2 106 58.5
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.3e-28 129.8 106 58.5
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.7e-28 129.4 106 58.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.3e-28 129.0 106 59.4
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 3.0e-28 128.6 106 59.4
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 3.0e-28 128.6 102 57.8
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.0e-28 128.6 104 61.5
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.1e-28 127.9 107 57.0
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 5.1e-28 127.9 106 59.4
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 5.1e-28 127.9 104 60.6
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.1e-28 127.9 104 59.6
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 5.1e-28 127.9 105 60.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 8.6e-28 127.1 106 58.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 8.6e-28 127.1 106 58.5
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 8.6e-28 127.1 106 58.5
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 8.6e-28 127.1 106 58.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 8.6e-28 127.1 106 58.5
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-27 126.7 106 58.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.1e-27 126.7 97 60.8
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.1e-27 126.7 108 55.6
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.5e-27 126.3 106 56.6
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.5e-27 126.3 105 60.0
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.5e-27 125.6 106 58.5
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 3.3e-27 125.2 106 58.5
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 3.3e-27 125.2 106 58.5
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.3e-27 124.8 106 58.5
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.3e-27 124.8 106 58.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.3e-27 124.8 106 56.6
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 7.3e-27 124.0 106 57.5
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 7.3e-27 124.0 106 57.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 7.3e-27 124.0 106 57.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 7.3e-27 124.0 106 57.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 7.3e-27 124.0 106 57.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.2e-26 123.2 105 59.0
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.2e-26 123.2 106 57.5
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 1.6e-26 122.9 106 58.5
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 2.8e-26 122.1 106 57.5
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 8.1e-26 120.6 108 59.3
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.1e-25 120.2 98 62.2
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.1e-25 118.6 106 55.7
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 3.1e-25 118.6 61 90.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 4.0e-25 118.2 106 56.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 4.0e-25 118.2 64 85.9
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 5.2e-25 117.9 99 53.5
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 6.9e-25 117.5 61 88.5
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.5e-24 116.3 99 57.6
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.4e-24 115.2 106 47.2
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 7.6e-24 114.0 83 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 5.4e-22 107.8 108 50.0
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.0e-20 103.6 106 48.1
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.3e-20 103.2 85 57.6
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.7e-20 102.8 106 52.8
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.9e-19 99.4 105 53.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 9.6e-19 97.1 99 46.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-18 96.3 157 38.2
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.6e-18 96.3 62 67.7
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.4e-17 92.4 62 67.7
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 6.9e-17 90.9 109 43.1
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 9.9e-16 87.0 54 72.2
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-13 80.1 65 53.8
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-13 80.1 76 51.3
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.0e-12 77.0 95 41.1
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-12 77.0 86 44.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.3e-12 75.9 99 38.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-12 75.9 76 48.7
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.4e-11 70.9 45 71.1
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.3e-10 70.1 63 55.6
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.1e-09 67.0 106 36.8
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 9.0e-09 63.9 37 70.3
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.8e-08 61.2 43 62.8


User provided reference genes

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