Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 0.0e+00 1119.0 733 100.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.5e-293 1010.7 738 92.4
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.6e-220 768.8 739 72.5
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.5e-168 597.4 762 58.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 4.2e-168 595.9 765 57.3
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.0e-165 587.0 752 58.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-164 583.9 765 56.9
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.4e-163 580.1 756 57.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.7e-162 576.6 765 56.7
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.0e-161 574.7 765 57.4
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.7e-161 573.9 773 56.8
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 5.5e-160 568.9 765 58.0
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-159 567.8 760 57.2
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-159 567.8 760 57.2
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.4e-158 564.3 760 56.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.4e-157 559.7 759 57.6
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 9.8e-157 558.1 649 49.8
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.3e-156 557.8 754 56.8
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 6.3e-156 555.4 759 56.8
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.4e-155 554.3 762 57.9
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.4e-155 553.5 757 56.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 3.1e-155 553.1 761 55.1
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 4.1e-155 552.7 764 55.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 9.1e-155 551.6 759 57.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.2e-154 551.2 762 57.7
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 4.5e-154 549.3 760 57.2
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 7.7e-154 548.5 757 56.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.8e-153 546.2 756 56.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.0e-153 545.8 760 54.5
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 8.6e-153 545.0 757 55.5
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.1e-152 544.7 646 48.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.1e-152 544.7 763 55.6
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.5e-152 544.3 761 55.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 9.5e-152 541.6 758 56.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 4.7e-151 539.3 785 55.3
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 6.1e-151 538.9 647 49.9
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.4e-150 537.7 767 55.3
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.8e-150 537.3 766 55.2
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 1.8e-150 537.3 795 52.6
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.0e-150 536.6 764 55.1
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 4.0e-150 536.2 756 55.2
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 4.0e-150 536.2 784 53.4
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.8e-150 535.4 645 50.1
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 6.8e-150 535.4 767 56.1
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 6.8e-150 535.4 760 56.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 4.4e-149 532.7 747 56.6
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 2.2e-148 530.4 767 55.0
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 3.7e-148 529.6 771 55.3
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.9e-148 529.3 767 54.9
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 4.9e-148 529.3 766 55.6
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 6.3e-148 528.9 760 55.4
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 6.3e-148 528.9 797 44.9
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.1e-147 526.6 789 54.1
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 9.2e-147 525.0 761 54.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-146 524.6 763 54.8
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.6e-146 524.2 645 50.2
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.6e-146 524.2 774 52.8
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.0e-145 521.5 785 52.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 2.9e-145 520.0 781 53.6
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 5.0e-145 519.2 751 56.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 6.6e-145 518.8 759 55.7
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.5e-144 517.7 753 54.7
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.5e-144 516.9 765 55.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.5e-144 516.9 854 50.4
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.3e-144 516.5 664 47.9
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-144 516.5 764 55.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.6e-144 515.8 764 55.0
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 7.3e-144 515.4 757 54.8
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.5e-144 515.0 765 54.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.6e-143 513.1 757 54.4
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 6.1e-143 512.3 753 54.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 6.1e-143 512.3 759 53.5
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.0e-142 511.5 801 52.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 3.0e-142 510.0 755 54.6
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 4.0e-142 509.6 771 52.9
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 3.4e-141 506.5 754 55.3
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 4.4e-141 506.1 829 51.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.4e-141 506.1 769 52.1
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-140 504.6 756 55.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.3e-140 504.6 761 55.1
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.7e-140 504.2 758 54.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 6.4e-140 502.3 754 54.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 8.3e-140 501.9 670 47.9
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.8e-139 500.7 752 53.1
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.2e-139 500.0 803 44.7
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 4.1e-139 499.6 646 49.4
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 5.4e-139 499.2 752 54.4
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 7.0e-139 498.8 752 52.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.7e-138 496.9 752 54.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.7e-137 494.2 761 54.5
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.3e-137 493.8 636 50.8
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 8.6e-137 491.9 753 55.0
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 8.6e-137 491.9 760 53.9
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.5e-136 491.1 756 54.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.9e-136 490.7 754 54.1
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 2.8e-135 486.9 759 55.7
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.1e-134 485.0 766 52.3
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 5.2e-134 482.6 752 53.1
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 6.8e-134 482.3 694 55.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.0e-133 480.7 720 53.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 2.0e-133 480.7 753 54.1
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.4e-131 474.6 760 51.4
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.0e-131 472.2 840 49.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.3e-124 451.4 558 47.3
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-121 441.4 778 49.9
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.3e-121 440.7 683 41.9
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.9e-121 439.9 452 55.5
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.3e-116 424.9 650 41.1
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.7e-116 424.5 547 48.3
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 8.4e-116 422.2 542 48.0
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.1e-114 417.5 793 48.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-109 401.7 554 60.1
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 4.4e-109 399.8 639 43.5
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.7e-108 397.9 765 46.9
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.9e-107 394.4 798 46.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.7e-106 390.6 670 38.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 8.1e-95 352.4 426 48.4
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.1e-86 325.5 641 36.3
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.9e-84 317.4 512 40.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.6e-74 285.0 393 46.3
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.0e-69 268.1 333 47.7
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.0e-68 265.8 387 45.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 6.7e-65 253.1 365 64.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.6e-64 251.1 361 64.5
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.6e-58 230.7 294 73.8
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.7e-56 223.4 397 58.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.3e-55 222.2 757 28.5
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.2e-50 205.7 721 33.4
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 3.3e-48 197.6 723 26.8
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 8.0e-42 176.4 201 48.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-34 151.8 139 56.8
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-33 148.3 159 51.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 6.8e-33 146.7 230 41.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.5e-32 143.3 231 40.7
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.7e-31 142.1 147 53.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-29 135.6 77 84.4
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-27 129.4 75 80.0
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-27 129.0 230 37.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.4e-25 122.5 332 32.5
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-25 121.3 81 69.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-24 119.4 68 83.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-21 109.0 58 84.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-21 108.6 60 81.7
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.6e-21 107.5 60 80.0
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-19 102.8 173 41.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 2.5e-19 101.7 121 46.3
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-19 100.9 59 81.4
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 6.8e-17 93.6 142 44.4
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-16 91.7 61 73.8
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 6.4e-15 87.0 75 61.3
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 3.2e-14 84.7 155 88.4
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.0e-13 80.5 141 43.3
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.3e-12 79.3 326 27.0
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.9e-12 77.8 90 44.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 5.1e-12 77.4 154 85.7
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 6.6e-12 77.0 188 45.2
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 8.6e-12 76.6 124 39.5
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.5e-08 63.5 30 100.0
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 9.9e-08 63.2 82 43.9
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.7e-07 62.4 159 33.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.9e-07 61.6 29 100.0
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.9e-07 61.6 30 96.7
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-06 59.7 181 32.6
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.4e-06 58.5 30 93.3
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 9.2e-06 56.6 30 83.3


User provided reference genes

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