Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.7e-268 928.7 461 100.0
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 4.8e-194 681.4 453 71.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 8.2e-194 680.6 424 74.8
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.6e-192 675.6 456 70.6
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 5.9e-192 674.5 455 71.0
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.9e-191 672.2 425 74.6
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.9e-190 669.5 449 71.9
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.5e-190 667.9 425 74.4
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 9.4e-190 667.2 458 70.1
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.7e-189 665.6 453 71.3
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 4.7e-189 664.8 449 69.3
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 6.1e-189 664.5 452 70.4
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-188 663.7 456 70.0
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.8e-188 662.9 453 71.3
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 3.0e-188 662.1 424 73.1
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.0e-188 662.1 434 71.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 2.0e-187 659.4 452 69.5
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.0e-187 659.4 456 70.2
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.0e-187 659.4 450 69.1
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.3e-187 658.7 449 68.8
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 4.4e-187 658.3 457 69.6
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 5.7e-187 657.9 454 68.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 9.7e-187 657.1 454 70.0
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.3e-186 656.8 452 70.4
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.7e-186 656.4 449 71.0
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.2e-186 656.0 424 72.6
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.8e-186 655.6 434 71.4
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 6.3e-186 654.4 449 69.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.4e-185 652.5 455 68.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 4.1e-185 651.7 462 68.4
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 4.1e-185 651.7 454 68.9
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.0e-185 651.0 426 71.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 7.0e-185 651.0 449 69.3
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.6e-184 649.8 478 65.3
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 2.0e-184 649.4 475 67.2
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 2.0e-184 649.4 451 68.3
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.6e-184 649.0 455 69.2
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 3.5e-184 648.7 469 67.8
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.5e-184 648.7 454 68.7
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 4.5e-184 648.3 453 68.9
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 5.9e-184 647.9 429 70.6
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.7e-183 646.4 456 68.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.7e-183 646.4 456 68.6
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 2.2e-183 646.0 454 68.3
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 3.8e-183 645.2 444 69.8
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 5.0e-183 644.8 456 68.0
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 8.5e-183 644.0 434 69.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 8.5e-183 644.0 459 68.6
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 8.5e-183 644.0 449 67.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 8.5e-183 644.0 423 73.0
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.1e-182 643.7 458 68.1
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.1e-182 643.7 455 68.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.1e-182 643.7 455 68.4
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.5e-182 642.5 459 68.4
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.2e-182 642.1 424 71.5
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 5.5e-182 641.3 451 68.1
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.2e-181 640.2 459 67.8
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.2e-181 640.2 453 69.1
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.7e-181 638.3 449 67.7
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 4.7e-181 638.3 459 67.1
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 6.1e-181 637.9 459 68.0
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.0e-181 637.5 501 61.9
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.0e-180 637.1 454 67.2
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.0e-180 637.1 454 67.2
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.0e-180 637.1 454 67.4
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-180 636.7 449 67.7
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.4e-180 636.7 455 67.0
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.3e-180 636.0 459 67.1
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.3e-180 636.0 459 66.9
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 5.2e-180 634.8 455 68.4
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.7e-180 634.4 456 67.5
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.1e-179 633.6 449 67.0
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.6e-179 632.5 455 67.0
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.6e-179 632.5 455 65.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.3e-179 632.1 467 66.0
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 4.4e-179 631.7 422 70.4
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.3e-178 630.2 460 67.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.8e-178 629.0 449 65.3
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.7e-178 628.6 459 66.4
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.8e-178 628.2 425 68.2
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 8.2e-178 627.5 460 67.4
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.1e-177 627.1 455 66.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.0e-177 624.4 486 63.0
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.6e-176 623.2 485 62.7
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-176 623.2 455 66.2
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.9e-174 616.3 459 66.2
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.6e-173 613.2 473 62.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.7e-173 612.5 436 67.7
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.6e-173 612.1 449 65.3
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.8e-172 609.8 450 66.4
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.3e-170 601.3 459 64.3
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 4.1e-169 598.6 460 64.6
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 7.7e-168 594.3 504 59.7
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.8e-167 592.0 597 52.4
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.2e-166 589.0 453 64.2
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.2e-165 587.0 525 56.6
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.0e-163 579.7 374 73.8
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.6e-157 558.9 455 60.7
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 3.0e-156 555.8 450 62.4
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.2e-155 553.9 358 72.3
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.2e-152 543.9 372 69.6
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.9e-150 536.6 359 71.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 3.6e-149 532.3 372 67.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 5.8e-147 525.0 451 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.0e-144 516.5 428 59.8
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.1e-141 506.5 449 59.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 2.5e-134 483.0 396 62.4
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.6e-133 480.3 449 57.0
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.7e-130 470.3 424 54.5
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 2.9e-130 469.5 255 89.4
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.3e-127 459.9 468 53.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.1e-124 449.5 392 60.2
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.5e-115 420.6 273 72.2
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 2.1e-112 410.2 425 51.5
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.9e-111 406.0 282 67.4
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 9.0e-108 394.8 279 66.3
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.4e-100 370.9 497 43.3
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.5e-97 360.1 249 66.7
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 5.7e-94 349.0 423 46.8
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.3e-87 327.8 536 39.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 7.4e-86 322.0 458 39.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.2e-82 310.5 249 62.2
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-70 270.0 243 56.8
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.3e-70 270.0 254 55.5
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 4.0e-63 246.5 239 54.4
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.5e-58 229.2 157 67.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 8.5e-58 228.8 194 60.8
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.7e-56 223.0 220 55.5
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.4e-55 221.5 153 66.7
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 3.7e-53 213.4 179 59.2
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 6.5e-50 202.6 139 69.8
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.2e-48 198.4 239 47.7
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.8e-38 162.2 114 71.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.1e-36 158.7 102 77.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.8e-36 157.9 105 73.3
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.7e-35 154.1 116 63.8
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.6e-35 153.3 114 65.8
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.1e-32 144.4 106 67.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.3e-31 141.0 90 75.6
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.0e-30 137.9 113 57.5
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.3e-23 114.4 99 57.6
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.5e-22 109.4 338 27.2
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-20 104.8 98 51.0
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 3.9e-18 97.1 72 59.7
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 5.1e-18 96.7 102 52.0
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.9e-17 94.7 97 53.6
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.6e-16 91.7 71 67.6
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.6e-16 91.7 71 67.6
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.6e-16 91.7 71 67.6
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 1.1e-15 89.0 72 55.6
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.6e-14 84.3 71 60.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 9.9e-14 82.4 303 26.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 6.0e-11 73.2 38 89.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.9e-09 68.2 146 37.7
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 3.3e-09 67.4 67 55.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.3e-09 67.0 37 86.5
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 7.3e-09 66.2 247 25.5
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 7.3e-09 66.2 247 25.5
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 9.6e-09 65.9 247 25.9
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.2e-08 65.5 246 25.6
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.2e-08 65.5 37 83.8
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.2e-08 65.5 293 25.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 3.6e-08 63.9 247 25.1
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 6.2e-08 63.2 237 26.6
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 6.2e-08 63.2 245 26.5
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 8.1e-08 62.8 250 25.6
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 1.1e-07 62.4 247 25.5
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.1e-07 62.4 243 28.0
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.8e-07 61.6 268 24.3
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.4e-07 61.2 245 24.9
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 2.4e-07 61.2 267 24.7
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 3.1e-07 60.8 268 24.3
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.0e-07 60.5 235 27.7
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 5.2e-07 60.1 244 26.6
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 6.9e-07 59.7 268 23.5
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 6.9e-07 59.7 257 26.5
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 9.0e-07 59.3 321 24.3
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-06 58.9 53 54.7
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.2e-06 58.9 264 25.0
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.5e-06 58.5 257 24.9
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.5e-06 58.5 244 26.2
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 2.0e-06 58.2 69 52.2
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.4e-06 57.0 243 26.3
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 4.4e-06 57.0 243 26.3


User provided reference genes

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