Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 0.0e+00 2516.5 1294 100.0
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 6.1e-271 938.3 647 75.6
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 8.0e-255 884.8 1334 40.1
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.5e-253 880.6 1275 41.7
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 4.7e-239 832.4 1328 38.3
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 8.1e-239 831.6 1320 39.3
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 6.0e-234 815.5 1320 38.7
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 1.5e-232 810.8 1338 39.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 1.9e-232 810.4 1334 38.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 2.8e-231 806.6 1336 38.3
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 2.4e-227 793.5 1333 38.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 3.5e-226 789.6 1322 38.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.0e-225 786.6 1322 37.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 6.6e-225 785.4 1329 37.4
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 2.5e-224 783.5 1333 38.4
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 3.3e-224 783.1 1335 37.8
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.3e-224 782.7 1322 37.8
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.4e-222 777.7 1332 38.1
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.1e-222 776.5 1331 37.5
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 4.0e-222 776.2 1337 37.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.6e-221 773.5 1330 37.1
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 7.6e-221 771.9 1323 37.2
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 1.7e-220 770.8 1331 37.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 3.2e-219 766.5 1341 37.4
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 4.2e-219 766.1 1337 36.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 7.9e-218 761.9 1333 37.1
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 8.7e-217 758.4 1334 38.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 2.5e-216 756.9 1333 37.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 4.8e-215 752.7 1377 36.4
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 8.1e-215 751.9 1343 36.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 5.8e-213 745.7 1295 38.1
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 2.9e-212 743.4 1329 36.0
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.9e-211 740.7 1269 38.1
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 6.0e-210 735.7 1346 36.6
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 2.4e-206 723.8 1373 36.7
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 3.8e-204 716.5 1377 36.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 1.9e-203 714.1 1390 35.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 4.6e-202 709.5 1313 37.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 1.9e-200 704.1 1310 37.3
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 1.9e-200 704.1 1307 37.9
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 3.7e-199 699.9 1340 35.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 8.2e-199 698.7 1336 36.5
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 1.4e-198 698.0 1320 34.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 2.4e-198 697.2 1334 35.7
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.1e-198 696.8 1543 32.5
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 5.3e-198 696.0 1329 35.8
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 6.9e-198 695.7 1338 36.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 1.2e-194 684.9 1332 35.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 1.8e-193 681.0 1338 35.1
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 5.1e-193 679.5 1340 35.7
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.1e-193 679.5 1365 35.2
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 1.9e-192 677.6 1338 35.1
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 1.9e-192 677.6 1326 35.0
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 2.5e-192 677.2 1333 35.0
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 4.3e-192 676.4 1311 35.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 5.7e-192 676.0 1332 34.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 7.4e-192 675.6 1331 34.9
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 9.7e-192 675.2 1347 35.6
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 8.2e-191 672.2 1319 34.6
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.4e-190 671.4 1331 35.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 2.4e-190 670.6 1339 34.7
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 2.4e-190 670.6 1337 34.8
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 4.1e-190 669.8 1331 34.3
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 2.0e-189 667.5 1342 35.1
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 2.6e-189 667.2 1332 35.4
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 7.7e-189 665.6 1331 34.6
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 3.8e-188 663.3 1329 34.3
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.7e-186 657.1 1254 35.4
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.8e-185 654.4 1333 34.5
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 2.0e-184 651.0 1336 34.2
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 2.6e-184 650.6 1340 34.3
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 5.7e-184 649.4 1343 34.3
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 5.7e-184 649.4 1313 34.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 7.4e-184 649.0 1343 34.2
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 7.4e-184 649.0 1342 34.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 2.2e-183 647.5 1340 34.2
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 4.1e-182 643.3 1285 34.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 2.4e-174 617.5 1341 34.3
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.9e-172 610.5 1449 32.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 8.5e-172 609.0 1269 34.2
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 1.1e-171 608.6 1372 32.9
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 2.2e-159 567.8 1320 32.7
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 5.9e-157 559.7 1218 32.5
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 5.5e-155 553.1 1329 32.0
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.8e-145 521.5 1089 33.4
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 9.8e-136 489.2 1020 33.3
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 5.1e-124 450.3 1298 29.3
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.9e-123 448.4 1383 28.1
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.9e-118 431.8 1395 26.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.7e-116 425.2 756 36.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 2.8e-114 417.9 1370 27.6
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.6e-114 417.5 1346 26.5
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.2e-110 404.4 752 35.9
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.2e-109 402.5 1337 27.2
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.2e-90 337.0 633 35.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.8e-84 318.9 736 30.7
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.3e-82 310.5 805 33.2
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.8e-79 301.2 1468 23.2
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.1e-77 295.4 766 28.9
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.3e-73 280.8 503 36.0
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 6.9e-73 280.4 592 33.6
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 4.7e-61 241.1 411 37.7
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 9.4e-54 216.9 402 34.8
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 6.1e-53 214.2 470 30.4
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.3e-38 165.2 815 21.6
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.4e-35 155.2 416 27.2
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 7.0e-33 147.5 251 38.2
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 5.6e-30 137.9 212 41.0
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 7.3e-30 137.5 695 24.2
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.6e-15 87.4 189 29.1
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-14 87.0 139 37.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 9.5e-14 84.0 129 38.0
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.2e-13 81.3 81 53.1
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.2e-12 78.2 122 40.2
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.2e-11 77.0 68 57.4
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.7e-10 73.2 109 42.2
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-10 73.2 219 30.1
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.1e-08 66.2 157 29.9
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.7e-08 65.9 139 30.2
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.7e-07 63.2 104 32.7
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 4.3e-06 58.5 60 43.3


User provided reference genes

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