Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb021880 Zea mays HOM05D002465 ORTHO05D008860 2.5e-176 622.1 336 100.0
Os10g0533200 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D008860 1.8e-145 519.6 328 84.1
COL.COLO4_30296 Corchorus olitorius HOM05D002465 ORTHO05D008860 2.3e-81 306.6 323 55.1
MD07G1279900 Malus domestica HOM05D002465 ORTHO05D008860 7.5e-80 301.6 323 54.2
Ciclev10006645m.g Citrus clementina HOM05D002465 ORTHO05D008860 1.7e-79 300.4 320 54.1
CiPaw.05G261500 Carya illinoinensis HOM05D002465 ORTHO05D008860 2.2e-79 300.1 322 53.4
Atru.chr1.341 Acer truncatum HOM05D002465 ORTHO05D008860 3.7e-79 299.3 323 52.6
Duzib205G0883 Durio zibethinus HOM05D002465 ORTHO05D008860 8.3e-79 298.1 317 54.6
FAN01G0734 Fragaria x ananassa HOM05D002465 ORTHO05D008860 1.2e-77 294.3 323 53.6
Prupe.2G302000 Prunus persica HOM05D002465 ORTHO05D008860 3.5e-77 292.7 332 53.3
Cfa016296 Carpinus fangiana HOM05D002465 ORTHO05D008860 6.0e-77 292.0 322 52.5
Gohir.A12G253500 Gossypium hirsutum HOM05D002465 ORTHO05D008860 7.8e-77 291.6 336 51.5
VMungo0720G1208 Vigna mungo HOM05D002465 ORTHO05D008860 7.8e-77 291.6 329 52.3
FAN06G4105 Fragaria x ananassa HOM05D002465 ORTHO05D008860 1.0e-76 291.2 323 52.9
Sed0017948 Sechium edule HOM05D002465 ORTHO05D008860 1.0e-76 291.2 322 52.8
FvH4_7g30420 Fragaria vesca HOM05D002465 ORTHO05D008860 1.3e-76 290.8 323 53.3
PGR142G3674 Punica granatum HOM05D002465 ORTHO05D008860 2.3e-76 290.0 340 51.2
CANSAT21G1380 Cannabis sativa HOM05D002465 ORTHO05D008860 3.9e-76 289.3 333 51.4
MBI11_g09066_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D008860 3.9e-76 289.3 325 52.6
Cpa.g.sc107.122 Carica papaya HOM05D002465 ORTHO05D008860 6.6e-76 288.5 320 55.0
FAN03G2954 Fragaria x ananassa HOM05D002465 ORTHO05D008860 1.1e-75 287.7 323 52.9
FAN06G0587 Fragaria x ananassa HOM05D002465 ORTHO05D008860 1.1e-75 287.7 323 52.9
Gohir.D12G255800 Gossypium hirsutum HOM05D002465 ORTHO05D008860 1.1e-75 287.7 336 50.6
Gorai.008G273900 Gossypium raimondii HOM05D002465 ORTHO05D008860 1.1e-75 287.7 336 50.6
Nn6g32108 Nelumbo nucifera HOM05D002465 ORTHO05D008860 1.1e-75 287.7 325 50.2
Nn6g32109 Nelumbo nucifera HOM05D002465 ORTHO05D008860 1.1e-75 287.7 325 50.2
Sabra04G0047800 Salix brachista HOM05D002465 ORTHO05D008860 1.1e-75 287.7 324 52.8
FAN10G1848 Fragaria x ananassa HOM05D002465 ORTHO05D008860 1.5e-75 287.3 323 52.9
Potri.004G072500 Populus trichocarpa HOM05D002465 ORTHO05D008860 1.9e-75 287.0 322 52.5
FAN10G3921 Fragaria x ananassa HOM05D002465 ORTHO05D008860 2.5e-75 286.6 323 52.9
DCAR_014522 Daucus carota HOM05D002465 ORTHO05D008860 4.3e-75 285.8 330 52.4
Haze_00056 Corylus avellana HOM05D002465 ORTHO05D008860 5.6e-75 285.4 328 52.1
TWI23G0306 Tripterygium wilfordii HOM05D002465 ORTHO05D008860 9.5e-75 284.6 322 51.6
QL09p012523 Quercus lobata HOM05D002465 ORTHO05D008860 1.2e-74 284.3 323 51.1
Thecc.03G185600 Theobroma cacao HOM05D002465 ORTHO05D008860 1.6e-74 283.9 322 51.2
HanXRQChr07g0206921 Helianthus annuus HOM05D002465 ORTHO05D008860 2.1e-74 283.5 327 51.4
Migut.F01082 Erythranthe guttata HOM05D002465 ORTHO05D008860 2.8e-74 283.1 325 52.3
Phvul.007G075300 Phaseolus vulgaris HOM05D002465 ORTHO05D008860 2.8e-74 283.1 328 51.8
CsaV3_3G017540 Cucumis sativus L. HOM05D002465 ORTHO05D008860 3.6e-74 282.7 319 50.8
Lalb_Chr02g0141271 Lupinus albus HOM05D002465 ORTHO05D008860 4.7e-74 282.3 328 50.9
ClCG05G008460 Citrullus lanatus HOM05D002465 ORTHO05D008860 6.2e-74 282.0 323 51.4
MELO3C006954.2 Cucumis melo HOM05D002465 ORTHO05D008860 8.1e-74 281.6 319 50.8
Manes.14G021500 Manihot esculenta HOM05D002465 ORTHO05D008860 1.1e-73 281.2 321 52.0
AUR62031433 Chenopodium quinoa HOM05D002465 ORTHO05D008860 1.4e-73 280.8 330 50.0
SGA_v2.0_scaffold10G05284 Striga asiatica HOM05D002465 ORTHO05D008860 1.8e-73 280.4 339 51.3
THA.LOC104811948 Tarenaya hassleriana HOM05D002465 ORTHO05D008860 2.4e-73 280.0 324 49.7
CARHR265740 Cardamine hirsuta HOM05D002465 ORTHO05D008860 4.0e-73 279.3 332 49.7
CSS0010708 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D008860 6.8e-73 278.5 331 51.1
Aqoxy5G00658 Aquilegia oxysepala HOM05D002465 ORTHO05D008860 8.9e-73 278.1 323 49.2
Ah.07g206480 Amaranthus hybridus HOM05D002465 ORTHO05D008860 1.2e-72 277.7 328 50.3
Cc02_g02280 Coffea canephora HOM05D002465 ORTHO05D008860 1.5e-72 277.3 327 52.3
CAN.G204.25 Capsicum annuum HOM05D002465 ORTHO05D008860 2.0e-72 276.9 323 50.8
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.6e-72 276.6 326 48.8
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.6e-72 276.6 326 49.1
Medtr1g099620 Medicago truncatula HOM05D002465 ORTHO05D008860 2.6e-72 276.6 324 50.0
Aa31LG3G9050 Aethionema arabicum HOM05D002465 ORTHO05D008860 5.8e-72 275.4 325 48.9
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 5.8e-72 275.4 326 49.1
TPR.G7770 Trifolium pratense HOM05D002465 ORTHO05D008860 7.6e-72 275.0 325 50.2
PGSC0003DMG400037424 Solanum tuberosum HOM05D002465 ORTHO05D008860 2.9e-71 273.1 325 48.6
PGSC0003DMG402028895 Solanum tuberosum HOM05D002465 ORTHO05D008860 2.9e-71 273.1 325 48.6
Glyma.20G163100 Glycine max HOM05D002465 ORTHO05D008860 3.8e-71 272.7 329 49.8
arahy.Tifrunner.gnm1.ann1.R026RD Arachis hypogaea HOM05D002465 ORTHO05D008860 4.9e-71 272.3 333 50.2
Solyc06g036330.1 Solanum lycopersicum HOM05D002465 ORTHO05D008860 6.4e-71 271.9 325 48.9
Sopen06g012110 Solanum pennellii HOM05D002465 ORTHO05D008860 6.4e-71 271.9 325 48.9
Thhalv10014103m.g Eutrema salsugineum HOM05D002465 ORTHO05D008860 8.4e-71 271.6 324 48.8
Sc13g0009250 Simmondsia chinensis HOM05D002465 ORTHO05D008860 1.4e-70 270.8 324 51.9
Psat6g195800 Pisum sativum HOM05D002465 ORTHO05D008860 1.9e-70 270.4 324 48.5
EL10Ac3g05401 Beta vulgaris HOM05D002465 ORTHO05D008860 3.2e-70 269.6 321 48.9
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 3.2e-70 269.6 311 50.2
PSO478G0039 Papaver somniferum HOM05D002465 ORTHO05D008860 3.2e-70 269.6 322 50.3
BcaB05g21982 Brassica carinata HOM05D002465 ORTHO05D008860 4.2e-70 269.2 333 48.0
SalBow2G2390 Salvia bowleyana HOM05D002465 ORTHO05D008860 7.1e-70 268.5 331 51.1
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.6e-69 267.3 309 49.2
Lj5g0014102 Lotus japonicus HOM05D002465 ORTHO05D008860 2.1e-69 266.9 338 48.2
AL8G27240 Arabidopsis lyrata HOM05D002465 ORTHO05D008860 3.5e-69 266.2 331 48.0
ATR0661G059 Amborella trichopoda HOM05D002465 ORTHO05D008860 4.6e-69 265.8 326 50.3
AT5G52810 Arabidopsis thaliana HOM05D002465 ORTHO05D008860 4.6e-69 265.8 333 47.7
Lsat_1_v5_gn_2_131440 Lactuca sativa HOM05D002465 ORTHO05D008860 1.0e-68 264.6 322 50.3
Ca_10714_v3 Cicer arietinum L. HOM05D002465 ORTHO05D008860 1.7e-68 263.8 333 48.0
BcaC03g14498 Brassica carinata HOM05D002465 ORTHO05D008860 1.9e-67 260.4 335 47.5
ECA238G0507 Erigeron canadensis HOM05D002465 ORTHO05D008860 1.9e-67 260.4 331 48.0
AUR62021108 Chenopodium quinoa HOM05D002465 ORTHO05D008860 1.3e-66 257.7 267 53.9
SEGI_38444 Sequoiadendron giganteum HOM05D002465 ORTHO05D008860 3.6e-66 256.1 327 47.4
Dinv35265 Davidia involucrata HOM05D002465 ORTHO05D008860 1.8e-65 253.8 306 50.0
Peaxi162Scf00618g00066 Petunia axillaris HOM05D002465 ORTHO05D008860 5.3e-65 252.3 269 52.4
arahy.Tifrunner.gnm1.ann1.9T5AB0 Arachis hypogaea HOM05D002465 ORTHO05D008860 6.9e-65 251.9 328 48.2
QL09p012480 Quercus lobata HOM05D002465 ORTHO05D008860 9.0e-65 251.5 321 48.0
TAR374G0466 Trochodendron aralioides HOM05D002465 ORTHO05D008860 1.3e-63 247.7 325 45.5
Nitab4.5_0004854g0030 Nicotiana tabacum HOM05D002465 ORTHO05D008860 8.4e-63 245.0 290 49.7
vmacro06619 Vaccinium macrocarpon HOM05D002465 ORTHO05D008860 7.8e-61 238.4 327 47.4
HPP92_015083 Vanilla planifolia HOM05D002465 ORTHO05D008860 6.6e-60 235.3 329 47.7
Eucgr.L01486 Eucalyptus grandis HOM05D002465 ORTHO05D008860 4.8e-58 229.2 323 47.1
unitig_26.g10201 Utricularia gibba HOM05D002465 ORTHO05D008860 2.9e-55 219.9 271 49.1
Nitab4.5_0016317g0010 Nicotiana tabacum HOM05D002465 ORTHO05D008860 5.4e-54 215.7 234 50.9
Mapoly0033s0116 Marchantia polymorpha HOM05D002465 ORTHO05D008860 6.0e-53 212.2 326 42.3
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 7.4e-51 205.3 195 55.9
HPP92_028539 Vanilla planifolia HOM05D002465 ORTHO05D008860 7.4e-51 205.3 196 55.6
Carub.0008s1297 Capsella rubella HOM05D002465 ORTHO05D008860 6.9e-49 198.7 188 53.2
CDE07G0391 Ceratophyllum demersum HOM05D002465 ORTHO05D008860 6.9e-49 198.7 324 41.4
Glyma.10G230300 Glycine max HOM05D002465 ORTHO05D008860 1.6e-42 177.6 291 41.9
CANSAT01G1695 Cannabis sativa HOM05D002465 ORTHO05D008860 8.2e-42 175.3 160 56.9
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.0e-40 170.6 226 46.9
AagrBONN_evm.TU.Sc2ySwM_362.356 Anthoceros agrestis HOM05D002465 ORTHO05D008860 1.9e-38 164.1 257 44.4
Aqoxy5G00661 Aquilegia oxysepala HOM05D002465 ORTHO05D008860 2.9e-31 140.2 109 62.4
Aqoxy5G00666 Aquilegia oxysepala HOM05D002465 ORTHO05D008860 7.2e-30 135.6 109 60.6
RcHm_v2.0_Chr1g0378551 Rosa chinensis HOM05D002465 ORTHO05D008860 2.7e-29 133.7 181 47.5
Cfa016297 Carpinus fangiana HOM05D002465 ORTHO05D008860 1.2e-24 118.2 86 66.3
Pp3c1_3280 Physcomitrium patens HOM05D002465 ORTHO05D008860 9.4e-22 108.6 124 45.2
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 1.8e-17 94.4 267 30.0
Actinidia34162 Actinidia chinensis HOM05D002465 ORTHO05D008860 3.9e-12 76.6 142 43.0
GSVIVG01028828001 Vitis vinifera HOM05D002465 ORTHO05D008860 3.2e-06 57.0 72 50.0


User provided reference genes

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