Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 7.0e-114 414.1 226 100.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 8.3e-91 337.4 228 82.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.0e-80 303.9 233 73.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.8e-62 241.9 200 68.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.1e-49 198.4 192 63.5
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.3e-48 196.4 195 60.5
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.0e-48 196.1 193 61.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.0e-48 196.1 195 61.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 5.1e-48 195.3 193 62.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.9e-47 193.4 193 58.5
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 4.3e-47 192.2 193 61.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 4.3e-47 192.2 193 61.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.3e-46 190.7 172 61.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.3e-46 190.7 193 58.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.3e-46 190.7 192 60.4
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.3e-46 190.7 192 60.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.2e-46 189.9 195 60.0
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.8e-46 189.5 195 59.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.7e-46 189.1 193 60.1
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 6.3e-46 188.3 193 62.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 6.3e-46 188.3 192 59.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 6.3e-46 188.3 193 60.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 8.2e-46 188.0 193 59.1
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-45 187.6 191 58.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-45 187.6 191 58.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-45 187.2 192 58.3
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-45 187.2 181 60.2
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.8e-45 186.8 131 71.8
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.4e-45 186.4 181 60.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 2.4e-45 186.4 193 58.5
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.4e-45 186.4 193 59.1
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.1e-45 186.0 192 58.3
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.1e-45 186.0 191 59.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 6.9e-45 184.9 194 59.3
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 6.9e-45 184.9 192 58.3
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 9.0e-45 184.5 134 71.6
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 9.0e-45 184.5 180 58.9
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.2e-44 184.1 192 56.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.2e-44 184.1 183 59.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.2e-44 184.1 135 68.9
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-44 183.7 193 57.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.5e-44 183.7 181 60.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.5e-44 183.7 183 60.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.5e-44 183.7 189 57.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.0e-44 183.3 194 57.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.4e-44 182.6 134 67.9
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.4e-44 182.6 181 59.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.5e-44 182.2 186 57.5
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.9e-44 181.8 181 59.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 5.9e-44 181.8 171 59.6
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.9e-44 181.8 122 75.4
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 7.7e-44 181.4 134 69.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 7.7e-44 181.4 214 55.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.0e-43 181.0 134 69.4
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.0e-43 181.0 180 57.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.3e-43 180.6 134 69.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-43 180.6 193 58.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.3e-43 180.6 193 58.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.3e-43 180.6 134 68.7
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-43 180.6 177 59.9
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.3e-43 180.6 181 58.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.7e-43 180.3 179 58.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-43 180.3 192 55.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.2e-43 179.9 192 55.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.9e-43 179.5 193 57.5
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-43 179.5 193 57.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-43 179.5 193 57.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.8e-43 179.1 192 56.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.8e-43 179.1 169 58.6
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.0e-43 178.7 192 55.7
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.0e-43 178.7 179 59.2
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.0e-43 178.7 171 59.1
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.0e-43 178.7 184 58.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 6.5e-43 178.3 193 57.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 8.5e-43 177.9 193 57.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.5e-43 177.9 180 57.2
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-42 177.6 153 62.7
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.4e-42 177.2 193 54.4
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.4e-42 177.2 185 57.3
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.4e-42 177.2 185 57.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.4e-42 177.2 179 57.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-42 177.2 193 55.4
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.4e-42 177.2 194 55.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.9e-42 176.8 199 53.8
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.9e-42 176.8 193 53.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.9e-42 176.8 181 58.6
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.9e-42 176.8 185 57.3
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.9e-42 176.8 178 57.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.5e-42 176.4 194 56.7
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.2e-42 176.0 183 56.8
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.2e-42 176.0 192 55.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.2e-42 176.0 180 61.7
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.2e-42 176.0 138 67.4
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.2e-42 176.0 180 57.2
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.2e-42 176.0 178 56.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.2e-42 174.9 134 67.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 7.2e-42 174.9 191 57.6
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 9.4e-42 174.5 180 56.1
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.4e-42 174.5 185 56.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.1e-41 173.3 180 56.1
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.1e-41 173.3 153 62.1
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.7e-41 172.9 189 54.5
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.7e-41 172.9 180 56.1
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.7e-41 172.9 180 55.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.7e-41 172.9 180 56.1
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.6e-41 172.6 183 55.7
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 4.6e-41 172.2 178 56.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.6e-41 172.2 182 56.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.1e-41 171.8 180 55.6
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.1e-41 171.8 182 56.6
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 7.9e-41 171.4 182 55.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.0e-40 171.0 183 55.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.8e-40 170.2 181 55.2
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.0e-40 169.5 180 55.6
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 3.0e-40 169.5 179 55.3
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 5.1e-40 168.7 127 70.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.1e-40 168.7 179 54.2
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-40 168.3 179 55.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-40 168.3 179 55.9
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 6.7e-40 168.3 196 55.6
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 8.8e-40 167.9 181 52.5
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-39 167.5 189 56.6
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-39 167.5 183 55.2
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.0e-39 166.8 127 66.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 4.3e-39 165.6 132 67.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.3e-39 165.6 147 61.9
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.2e-38 163.3 189 56.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 6.3e-38 161.8 147 59.9
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.1e-37 159.5 129 64.3
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.2e-36 157.5 191 56.5
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.5e-36 157.1 149 57.0
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.6e-36 156.4 105 73.3
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.4e-36 156.0 116 67.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.4e-36 156.0 196 48.5
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.0e-35 154.5 127 63.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.0e-35 154.5 179 50.8
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.3e-35 154.1 127 61.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.1e-34 151.0 195 47.2
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.4e-31 139.0 254 39.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.8e-30 136.3 162 48.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.2e-26 121.7 85 69.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.0e-24 116.3 81 66.7
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.0e-24 115.9 82 69.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-23 114.0 82 68.3
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 6.3e-22 108.6 109 55.0
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.4e-21 106.7 159 42.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.4e-21 106.7 128 48.4
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-21 105.9 126 53.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.6e-20 104.0 134 45.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.5e-20 102.4 144 43.1
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 7.7e-20 101.7 125 50.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.0e-19 101.3 181 36.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.5e-18 95.5 123 51.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 6.1e-17 92.0 95 44.2
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 3.0e-16 89.7 88 61.4
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 3.0e-16 89.7 88 61.4
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.5e-10 68.9 106 36.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.0e-08 62.8 79 43.0
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.4e-07 59.3 52 59.6
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.3e-06 55.5 42 64.3


User provided reference genes

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