Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 4.0e-117 424.9 226 100.0
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 5.3e-77 291.6 231 75.3
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 3.3e-71 272.3 168 88.7
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.4e-50 203.8 205 57.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.2e-50 202.6 235 54.0
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.2e-50 202.6 234 56.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.3e-50 201.1 234 55.6
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.6e-49 200.3 213 57.7
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.7e-49 199.5 232 55.6
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 4.6e-49 198.7 238 56.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 4.6e-49 198.7 209 59.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 6.1e-49 198.4 234 55.1
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 7.9e-49 198.0 232 55.2
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.0e-48 197.6 229 54.1
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.5e-47 193.0 240 52.5
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 7.4e-47 191.4 233 54.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 7.4e-47 191.4 214 58.4
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.4e-47 191.4 215 57.2
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-46 190.7 229 54.1
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.3e-46 190.7 214 56.5
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.6e-46 190.3 229 54.1
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.8e-46 189.5 229 54.6
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.8e-46 188.7 210 55.2
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-45 187.6 235 51.9
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.4e-45 187.2 231 52.8
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.4e-45 187.2 228 53.1
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.8e-45 186.8 238 52.1
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.8e-45 186.8 234 50.9
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.4e-45 186.4 228 51.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 3.1e-45 186.0 213 55.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 4.1e-45 185.7 210 55.2
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 4.1e-45 185.7 231 53.2
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 5.3e-45 185.3 234 50.4
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 6.9e-45 184.9 228 53.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 9.0e-45 184.5 229 52.0
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 5.9e-44 181.8 211 54.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 7.7e-44 181.4 232 52.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 7.7e-44 181.4 242 50.0
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.0e-43 181.0 210 54.8
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.2e-43 179.9 207 55.1
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.9e-43 179.5 212 53.3
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.9e-43 179.5 212 53.3
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.9e-43 179.5 253 48.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.9e-43 179.5 243 51.4
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.8e-43 179.1 236 49.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.8e-43 179.1 214 55.6
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 5.0e-43 178.7 212 53.3
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.5e-43 178.3 208 54.3
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 8.5e-43 177.9 209 52.6
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 8.5e-43 177.9 226 50.9
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.1e-42 177.6 227 50.2
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.4e-42 177.2 212 52.4
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.9e-42 176.8 207 55.1
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.9e-42 176.8 230 50.9
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.2e-42 175.6 214 53.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 4.2e-42 175.6 241 51.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 7.2e-42 174.9 206 52.4
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 9.4e-42 174.5 226 48.7
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.2e-41 174.1 206 52.4
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.6e-41 173.7 208 54.3
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.1e-41 173.3 219 52.1
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 2.7e-41 172.9 210 49.5
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.7e-41 172.9 212 52.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 7.9e-41 171.4 225 50.7
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.8e-40 170.2 200 53.5
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.3e-40 169.9 230 49.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.3e-40 169.9 218 51.8
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 2.3e-40 169.9 226 50.4
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.9e-40 169.1 268 46.6
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 8.8e-40 167.9 206 50.5
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.1e-39 167.5 230 49.6
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.3e-39 166.0 198 55.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.3e-39 166.0 208 51.9
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.3e-39 166.0 232 47.0
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 4.3e-39 165.6 218 50.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.7e-39 165.2 277 44.8
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 7.4e-39 164.9 223 51.1
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 7.4e-39 164.9 218 51.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.7e-38 163.7 228 49.6
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.7e-38 163.7 228 47.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.7e-38 163.7 242 46.3
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 4.8e-38 162.2 231 47.6
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 6.3e-38 161.8 177 57.1
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.1e-37 161.0 233 47.6
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.4e-37 160.6 204 51.5
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.1e-37 159.5 215 50.7
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.1e-37 159.1 193 54.4
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.1e-37 159.1 193 54.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 4.1e-37 159.1 204 48.5
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.3e-37 158.7 217 51.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 9.1e-37 157.9 208 49.0
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.5e-36 157.1 225 46.7
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.5e-36 157.1 226 47.8
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.4e-36 156.0 229 47.2
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.3e-35 154.1 218 47.7
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.1e-34 151.0 225 46.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-34 150.6 227 46.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.5e-34 149.8 225 45.3
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 4.2e-34 149.1 305 39.7
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.6e-33 147.1 227 45.8
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.6e-33 147.1 227 45.8
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.6e-33 146.0 225 45.3
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 4.7e-33 145.6 232 43.5
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.0e-32 142.9 216 47.2
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.0e-32 142.9 227 44.9
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.9e-32 142.5 264 43.2
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.9e-32 142.5 264 43.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.9e-32 142.5 239 44.4
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 5.1e-32 142.1 230 47.0
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 8.8e-32 141.4 206 47.1
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 5.7e-31 138.7 232 42.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.7e-31 138.7 294 37.1
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.2e-30 136.7 209 45.0
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 8.2e-30 134.8 81 85.2
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.8e-29 133.7 223 43.5
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.5e-28 129.4 224 39.7
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.5e-28 129.0 170 47.1
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 4.5e-28 129.0 208 43.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 4.5e-28 129.0 208 43.8
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.2e-27 126.7 230 39.1
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.2e-27 126.7 230 39.1
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.2e-27 126.7 230 39.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.9e-27 126.3 227 42.3
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 5.0e-27 125.6 220 44.1
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.5e-26 124.0 215 40.9
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.9e-26 123.6 228 39.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 3.6e-25 119.4 230 40.0
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 3.6e-25 119.4 230 40.0
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.0e-23 113.6 228 36.8
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 8.2e-22 108.2 158 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.2e-20 104.4 96 61.5
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.2e-20 104.4 157 49.7
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.9e-20 102.1 155 47.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.2e-19 100.1 146 45.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.4e-16 90.9 203 36.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.2e-14 83.6 128 43.0
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 2.0e-12 77.0 160 38.1
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.2e-11 73.6 129 38.8
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.5e-10 70.1 40 82.5
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.4e-08 64.3 80 48.8
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 4.0e-08 62.8 69 49.3
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.7e-06 57.4 92 41.3


User provided reference genes

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