Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 2.0e-242 842.0 440 100.0
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 2.2e-204 715.7 440 87.0
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 2.7e-186 655.6 440 79.8
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 2.7e-186 655.6 439 78.8
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 5.1e-185 651.4 440 78.2
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 1.5e-184 649.8 440 78.4
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.5e-184 649.8 440 78.4
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 1.9e-184 649.4 440 78.6
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 2.5e-184 649.0 440 78.4
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 3.3e-184 648.7 440 78.9
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.3e-184 648.3 440 78.2
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 4.3e-184 648.3 440 78.2
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 4.3e-184 648.3 440 78.2
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 7.3e-184 647.5 440 78.2
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.3e-183 646.7 440 78.2
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.3e-183 646.7 440 78.4
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 1.3e-183 646.7 440 78.2
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 1.6e-183 646.4 445 77.1
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 2.1e-183 646.0 440 78.2
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 3.6e-183 645.2 440 78.6
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 4.8e-183 644.8 440 78.2
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 6.2e-183 644.4 440 78.0
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 6.2e-183 644.4 440 77.7
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.1e-182 643.7 440 78.2
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 1.8e-182 642.9 440 77.7
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 1.8e-182 642.9 440 77.7
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 3.1e-182 642.1 440 77.0
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 3.1e-182 642.1 440 77.7
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 6.9e-182 641.0 440 76.8
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 1.2e-181 640.2 440 77.5
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 1.2e-181 640.2 440 77.5
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 1.2e-181 640.2 440 77.5
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.5e-181 639.8 440 77.5
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.5e-181 639.8 440 77.5
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 1.5e-181 639.8 441 77.6
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 2.0e-181 639.4 440 76.8
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 2.0e-181 639.4 440 76.6
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 2.6e-181 639.0 440 77.3
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.4e-181 638.6 440 77.0
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 4.5e-181 638.3 440 77.3
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 5.8e-181 637.9 440 77.7
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 7.6e-181 637.5 440 77.0
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 9.9e-181 637.1 440 76.8
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 1.3e-180 636.7 440 76.8
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 2.2e-180 636.0 440 76.4
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.2e-180 636.0 440 76.4
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 2.2e-180 636.0 440 76.4
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 2.2e-180 636.0 440 77.0
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 2.2e-180 636.0 440 76.8
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 2.9e-180 635.6 440 76.8
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 4.9e-180 634.8 440 76.4
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 6.4e-180 634.4 440 76.1
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 8.4e-180 634.0 440 76.8
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 8.4e-180 634.0 440 77.5
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.4e-179 632.5 440 76.6
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 2.4e-179 632.5 441 76.6
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 4.2e-179 631.7 440 76.6
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 4.2e-179 631.7 440 76.4
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 7.1e-179 630.9 440 76.1
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.2e-178 630.2 440 75.7
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 2.1e-178 629.4 440 76.1
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 2.1e-178 629.4 440 76.1
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.5e-178 628.6 440 75.5
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 4.6e-178 628.2 443 76.1
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 4.6e-178 628.2 440 76.6
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 7.9e-178 627.5 440 75.2
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 1.0e-177 627.1 440 75.5
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 3.0e-177 625.5 440 75.5
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.0e-177 625.5 440 75.5
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 3.0e-177 625.5 440 75.9
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 3.9e-177 625.2 440 75.5
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 3.9e-177 625.2 440 75.5
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 8.7e-177 624.0 440 76.1
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 1.9e-176 622.9 440 75.5
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 3.3e-176 622.1 440 75.7
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 4.3e-176 621.7 440 75.7
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 2.8e-175 619.0 440 75.0
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 2.8e-175 619.0 440 75.0
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 2.8e-175 619.0 440 75.0
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 3.7e-175 618.6 440 75.0
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 4.8e-175 618.2 440 75.0
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 4.8e-175 618.2 440 75.0
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 1.1e-174 617.1 440 75.7
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 1.1e-174 617.1 440 74.8
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 1.1e-174 617.1 440 74.8
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 1.4e-174 616.7 440 74.5
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 1.4e-174 616.7 440 74.5
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 1.4e-174 616.7 440 74.5
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 2.4e-174 615.9 440 74.5
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 3.1e-174 615.5 448 73.9
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 6.9e-174 614.4 440 74.3
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 6.9e-174 614.4 440 74.3
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 6.9e-174 614.4 440 75.9
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 2.0e-173 612.8 444 74.1
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 2.2e-172 609.4 509 66.6
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 1.4e-171 606.7 440 74.3
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 7.1e-171 604.4 543 63.5
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 6.0e-170 601.3 432 74.8
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 3.9e-169 598.6 440 73.4
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.8e-167 591.7 532 64.1
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 1.4e-166 590.1 440 72.5
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 5.3e-166 588.2 440 72.0
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 6.9e-166 587.8 440 73.0
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 4.9e-164 581.6 479 68.3
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 1.9e-163 579.7 440 69.1
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 1.9e-163 579.7 395 77.5
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 3.2e-163 578.9 440 72.5
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.0e-161 573.9 473 69.1
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.8e-161 573.2 481 67.6
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 6.7e-161 571.2 460 67.8
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 7.4e-160 567.8 396 76.8
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.1e-158 563.9 410 73.9
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 1.2e-157 560.5 440 67.5
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 4.5e-157 558.5 439 66.5
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 5.9e-157 558.1 438 67.4
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 3.8e-156 555.4 396 75.3
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.8e-153 546.6 429 70.4
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 5.3e-142 508.4 438 63.0
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 4.7e-138 495.4 440 63.6
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 3.0e-137 492.7 440 63.6
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 9.1e-134 481.1 389 67.6
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 9.4e-123 444.5 311 76.5
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.6e-122 443.7 461 56.2
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 3.6e-114 416.0 352 66.2
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 2.2e-103 380.2 433 49.2
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 1.1e-102 377.9 266 76.7
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.9e-99 367.1 446 47.3
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 2.7e-93 346.7 218 82.1
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 1.9e-86 323.9 445 44.3
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 5.4e-86 322.4 216 78.2
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 6.0e-77 292.4 216 71.8
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 4.5e-64 249.6 150 86.7
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 7.1e-62 242.3 150 84.0
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.5e-53 213.4 398 36.2
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.7e-47 194.5 223 53.8
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 7.9e-45 185.7 148 66.2
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 2.5e-35 154.1 245 44.1
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 3.3e-35 153.7 247 37.7
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 3.8e-31 140.2 97 73.2
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 3.8e-31 140.2 97 73.2
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 1.1e-14 85.5 49 77.6
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 1.5e-11 75.1 95 50.5
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 1.0e-07 62.4 49 67.3


User provided reference genes

Program Settings