Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 5.5e-46 187.2 89 100.0
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 9.4e-38 159.8 89 86.5
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.2e-37 159.5 89 83.1
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 1.6e-37 159.1 89 80.9
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.6e-37 159.1 87 82.8
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.6e-37 159.1 88 83.0
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.6e-37 157.9 89 82.0
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 3.6e-37 157.9 89 82.0
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 80.9
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 82.0
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 82.0
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 82.0
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 80.9
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 4.7e-37 157.5 92 82.6
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 80.9
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 80.9
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 6.1e-37 157.1 89 82.0
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 8.0e-37 156.8 89 82.0
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 8.0e-37 156.8 88 80.7
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.0e-37 156.8 89 80.9
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.0e-36 156.4 88 79.5
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.0e-36 156.4 89 80.9
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.0e-36 156.4 89 80.9
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.0e-36 156.4 89 80.9
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.4e-36 156.0 89 80.9
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 1.4e-36 156.0 89 80.9
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.4e-36 156.0 89 80.9
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.4e-36 156.0 89 80.9
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.8e-36 155.6 89 80.9
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.8e-36 155.6 89 80.9
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.3e-36 155.2 86 82.6
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.3e-36 155.2 89 80.9
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.3e-36 155.2 84 83.3
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 3.0e-36 154.8 89 79.8
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.0e-36 154.8 89 80.9
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.0e-36 154.8 89 80.9
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 3.0e-36 154.8 89 79.8
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.9e-36 154.5 89 78.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 3.9e-36 154.5 89 80.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 3.9e-36 154.5 89 80.9
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 79.8
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.2e-36 154.1 81 86.4
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.2e-36 154.1 81 86.4
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 5.2e-36 154.1 81 86.4
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 79.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 79.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 79.8
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 78.7
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 80.9
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 6.7e-36 153.7 87 81.6
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 6.7e-36 153.7 84 82.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 6.7e-36 153.7 84 82.1
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 6.7e-36 153.7 88 77.3
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 8.8e-36 153.3 89 79.8
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.1e-35 152.9 81 85.2
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.1e-35 152.9 81 85.2
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.1e-35 152.9 81 85.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.1e-35 152.9 89 78.7
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 1.1e-35 152.9 81 85.2
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-35 152.9 82 85.4
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.1e-35 152.9 81 85.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.5e-35 152.5 81 85.2
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.5e-35 152.5 89 78.7
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.0e-35 152.1 81 84.0
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.0e-35 152.1 86 80.2
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.0e-35 152.1 81 85.2
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 2.6e-35 151.8 81 85.2
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 2.6e-35 151.8 81 85.2
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 2.6e-35 151.8 81 84.0
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.6e-35 151.8 84 81.0
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.6e-35 151.8 81 85.2
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.6e-35 151.8 82 82.9
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.6e-35 151.8 89 77.5
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 3.3e-35 151.4 82 84.1
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.3e-35 151.4 82 84.1
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 4.4e-35 151.0 89 77.5
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 4.4e-35 151.0 81 85.2
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.4e-35 151.0 81 85.2
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 4.4e-35 151.0 81 84.0
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 5.7e-35 150.6 89 77.5
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 5.7e-35 150.6 89 77.5
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 5.7e-35 150.6 81 84.0
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 5.7e-35 150.6 87 79.3
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 5.7e-35 150.6 81 85.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 7.4e-35 150.2 89 77.5
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 9.7e-35 149.8 81 82.7
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 9.7e-35 149.8 78 84.6
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 9.7e-35 149.8 83 80.7
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.3e-34 149.4 81 84.0
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.7e-34 149.1 81 84.0
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.7e-34 149.1 78 85.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 1.7e-34 149.1 79 83.5
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.7e-34 149.1 83 80.7
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.7e-34 149.1 89 78.7
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.2e-34 148.7 81 84.0
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 2.2e-34 148.7 81 84.0
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 3.7e-34 147.9 81 81.5
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.7e-34 147.9 81 82.7
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.7e-34 147.9 89 78.7
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 4.8e-34 147.5 89 76.4
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 6.3e-34 147.1 78 84.6
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 6.3e-34 147.1 80 83.8
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 6.3e-34 147.1 81 81.5
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 8.2e-34 146.7 81 80.2
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.2e-34 146.7 81 81.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.2e-34 146.7 81 81.5
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.1e-33 146.4 87 79.3
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 1.1e-33 146.4 81 80.2
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.4e-33 146.0 82 78.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.4e-33 146.0 82 78.0
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.4e-33 146.0 89 77.5
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.4e-33 146.0 91 75.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.4e-33 146.0 89 75.3
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 1.4e-33 146.0 75 86.7
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.8e-33 145.6 81 81.5
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.8e-33 145.6 79 81.0
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.4e-33 145.2 78 80.8
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.1e-33 144.4 81 81.5
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 4.1e-33 144.4 81 81.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 4.1e-33 144.4 85 78.8
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 4.1e-33 144.4 76 85.5
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.3e-33 144.1 79 77.2
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 9.1e-33 143.3 82 76.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 9.1e-33 143.3 96 71.9
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.2e-32 142.9 79 78.5
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.6e-32 142.5 81 77.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.6e-32 142.5 76 82.9
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 5.9e-32 140.6 97 71.1
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 5.9e-32 140.6 75 84.0
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 7.7e-32 140.2 81 75.3
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.7e-31 139.0 82 78.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.9e-31 138.3 74 81.1
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 2.9e-31 138.3 78 75.6
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 6.5e-31 137.1 74 79.7
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 6.5e-31 137.1 74 79.7
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 6.5e-31 137.1 74 79.7
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 6.5e-31 137.1 74 79.7
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.1e-30 136.3 77 81.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.1e-29 132.1 92 66.3
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 3.6e-29 131.3 70 82.9
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.5e-27 125.9 68 82.4
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 7.5e-27 123.6 69 76.8
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.8e-26 120.9 78 75.6
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.1e-25 119.8 70 74.3
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.8e-25 119.0 64 84.4
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 7.0e-25 117.1 69 75.4
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.0e-23 113.2 64 75.0
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 2.2e-23 112.1 60 80.0
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 6.3e-18 94.0 83 50.6
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.6e-16 89.4 55 76.4
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 3.5e-16 88.2 48 83.3
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.3e-15 85.5 52 71.2
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 1.5e-14 82.8 88 54.5
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 9.5e-14 80.1 66 57.6
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.0e-12 76.6 44 79.5
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.3e-12 75.5 38 81.6
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 5.2e-12 74.3 42 78.6
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 6.8e-12 73.9 39 74.4
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 6.8e-12 73.9 39 74.4
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.6e-11 72.0 40 85.0
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 5.7e-11 70.9 47 74.5
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 9.8e-11 70.1 53 66.0
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.3e-10 67.4 66 54.5
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-09 66.6 39 74.4
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.8e-09 65.9 38 84.2
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.5e-08 61.6 38 78.9
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.9e-07 58.5 33 78.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.6e-07 57.4 29 79.3
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.9e-06 55.8 38 76.3


User provided reference genes

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