Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.5e-53 212.6 106 100.0
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 2.9e-46 188.3 109 91.7
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 3.8e-38 161.4 105 76.2
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.2e-26 123.2 98 69.4
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 4.4e-26 121.3 93 69.9
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 7.5e-26 120.6 88 71.6
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.3e-25 119.8 95 68.4
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-25 119.8 93 68.8
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.2e-25 119.0 97 69.1
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 3.7e-25 118.2 92 69.6
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 6.4e-25 117.5 88 70.5
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 8.3e-25 117.1 97 64.9
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.1e-24 116.7 102 64.7
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.4e-24 115.5 88 69.3
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.4e-24 115.5 88 69.3
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 3.2e-24 115.2 88 67.0
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 4.1e-24 114.8 97 67.0
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.1e-24 114.8 98 65.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.1e-24 114.8 98 65.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.1e-24 114.8 98 65.3
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 5.4e-24 114.4 88 67.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 5.4e-24 114.4 88 67.0
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 5.4e-24 114.4 89 66.3
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 5.4e-24 114.4 97 64.9
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 5.4e-24 114.4 88 67.0
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.2e-23 113.2 98 65.3
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.6e-23 112.8 94 68.1
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.0e-23 112.5 89 66.3
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.0e-23 112.5 88 65.9
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.7e-23 112.1 92 67.4
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 3.5e-23 111.7 89 66.3
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 3.5e-23 111.7 93 65.6
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 4.6e-23 111.3 92 68.5
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.0e-22 110.2 88 67.0
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 3.0e-22 108.6 92 64.1
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 3.0e-22 108.6 97 62.9
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.0e-22 108.6 92 65.2
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.0e-22 108.6 92 65.2
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 3.9e-22 108.2 97 63.9
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 6.6e-22 107.5 92 66.3
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 8.6e-22 107.1 89 64.0
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 1.1e-21 106.7 88 64.8
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.5e-21 106.3 97 59.8
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.5e-21 106.3 92 65.2
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.9e-21 105.9 92 62.0
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 2.5e-21 105.5 92 65.2
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 3.3e-21 105.1 95 61.1
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 3.3e-21 105.1 92 63.0
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 4.3e-21 104.8 92 64.1
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 5.6e-21 104.4 92 64.1
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 5.6e-21 104.4 92 64.1
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 5.6e-21 104.4 92 64.1
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 9.5e-21 103.6 84 64.3
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 9.5e-21 103.6 92 62.0
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.2e-20 103.2 92 60.9
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.2e-20 103.2 95 61.1
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.2e-20 103.2 89 61.8
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.6e-20 102.8 92 63.0
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.6e-20 102.8 92 59.8
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.1e-20 102.4 88 61.4
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.1e-20 102.4 94 64.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 3.6e-20 101.7 92 60.9
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 4.7e-20 101.3 81 65.4
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 6.2e-20 100.9 88 62.5
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 6.2e-20 100.9 88 62.5
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 8.1e-20 100.5 88 62.5
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 62.5
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 62.5
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 60.2
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 60.2
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 60.2
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 60.2
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 60.2
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.4e-19 99.8 92 60.9
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.4e-19 99.8 88 61.4
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.8e-19 99.4 88 61.4
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.2e-18 96.7 92 57.6
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.5e-18 96.3 131 47.3
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.0e-18 95.9 92 59.8
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 2.6e-18 95.5 89 60.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 4.4e-18 94.7 147 42.2
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.3e-17 93.2 103 54.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.7e-17 92.8 72 68.1
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.7e-17 92.8 83 65.1
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.9e-17 92.0 84 57.1
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 4.9e-17 91.3 98 57.1
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 4.1e-16 88.2 71 66.2
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 7.1e-16 87.4 71 63.4
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 6.0e-15 84.3 71 66.2
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 6.6e-14 80.9 89 56.2
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.2e-12 76.6 88 55.7
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.6e-12 76.3 68 64.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 4.7e-12 74.7 59 64.4
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 8.1e-12 73.9 67 65.7
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.5e-10 69.7 163 36.8
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.6e-10 68.9 64 65.6
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.6e-10 68.9 51 70.6
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 2.9e-09 65.5 69 56.5
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.4e-09 63.9 55 63.6
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 8.4e-09 63.9 50 66.0
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 3.2e-08 62.0 50 66.0
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.2e-08 62.0 50 68.0
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 2.7e-07 58.9 39 74.4
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 1.7e-06 56.2 58 50.0
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 3.0e-06 55.5 49 55.1


User provided reference genes

Program Settings