Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001330 Zea mays HOM05D004347 ORTHO05D005270 1.0e-48 196.4 100 100.0
Zm00001eb188330 Zea mays HOM05D004347 ORTHO05D005270 9.9e-20 100.1 67 79.1
Os02g0704800 Oryza sativa ssp. japonica HOM05D004347 ORTHO05D005270 1.1e-18 96.7 67 74.6
EL10Ac3g05924 Beta vulgaris HOM05D004347 ORTHO05D005270 3.2e-18 95.1 67 73.1
PGR031G1892 Punica granatum HOM05D004347 ORTHO05D005270 4.2e-18 94.7 67 71.6
MD15G1024200 Malus domestica HOM05D004347 ORTHO05D005270 1.6e-17 92.8 67 71.6
AUR62002295 Chenopodium quinoa HOM05D004347 ORTHO05D005270 2.1e-17 92.4 67 70.1
AUR62015395 Chenopodium quinoa HOM05D004347 ORTHO05D005270 2.1e-17 92.4 67 70.1
PSO210G5717 Papaver somniferum HOM05D004347 ORTHO05D005270 2.7e-17 92.0 66 72.7
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 2.7e-17 92.0 66 72.7
PSO409G0040 Papaver somniferum HOM05D004347 ORTHO05D005270 2.7e-17 92.0 66 72.7
Ah.07g201940 Amaranthus hybridus HOM05D004347 ORTHO05D005270 3.5e-17 91.7 67 68.7
Ah.08g222650 Amaranthus hybridus HOM05D004347 ORTHO05D005270 3.5e-17 91.7 67 68.7
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 4.6e-17 91.3 67 71.6
Lalb_Chr24g0398901 Lupinus albus HOM05D004347 ORTHO05D005270 4.6e-17 91.3 105 52.4
Duzib093G0814 Durio zibethinus HOM05D004347 ORTHO05D005270 7.9e-17 90.5 67 70.1
CANSAT11G1506 Cannabis sativa HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 68.7
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 70.1
MD08G1028500 Malus domestica HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 70.1
Potri.005G229400 Populus trichocarpa HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 70.1
Hund03153 Selenicereus undatus HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 70.1
Thecc.08G030400 Theobroma cacao HOM05D004347 ORTHO05D005270 1.0e-16 90.1 67 70.1
MELO3C003814.2 Cucumis melo HOM05D004347 ORTHO05D005270 1.3e-16 89.7 67 68.7
CsaV3_3G045350 Cucumis sativus L. HOM05D004347 ORTHO05D005270 1.3e-16 89.7 67 68.7
Gorai.009G200700 Gossypium raimondii HOM05D004347 ORTHO05D005270 1.3e-16 89.7 67 70.1
Sed0020994 Sechium edule HOM05D004347 ORTHO05D005270 1.3e-16 89.7 67 68.7
Zm00001eb252020 Zea mays HOM05D004347 ORTHO05D005270 1.3e-16 89.7 67 70.1
CSS0015335 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 1.8e-16 89.4 67 70.1
Manes.05G157200 Manihot esculenta HOM05D004347 ORTHO05D005270 1.8e-16 89.4 67 68.7
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 2.3e-16 89.0 67 67.2
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 2.3e-16 89.0 67 67.2
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 3.0e-16 88.6 67 67.2
Gohir.D05G195800 Gossypium hirsutum HOM05D004347 ORTHO05D005270 3.0e-16 88.6 51 84.3
Prupe.1G376500 Prunus persica HOM05D004347 ORTHO05D005270 3.0e-16 88.6 67 65.7
MBI18_g10579_MAGBIO Magnolia biondii HOM05D004347 ORTHO05D005270 3.9e-16 88.2 67 67.2
Sc15g0007070 Simmondsia chinensis HOM05D004347 ORTHO05D005270 3.9e-16 88.2 67 67.2
arahy.Tifrunner.gnm1.ann1.S41V7E Arachis hypogaea HOM05D004347 ORTHO05D005270 5.1e-16 87.8 67 68.7
arahy.Tifrunner.gnm1.ann1.YLZT45 Arachis hypogaea HOM05D004347 ORTHO05D005270 5.1e-16 87.8 67 68.7
Ciclev10001509m.g Citrus clementina HOM05D004347 ORTHO05D005270 5.1e-16 87.8 67 70.1
DCAR_022470 Daucus carota HOM05D004347 ORTHO05D005270 5.1e-16 87.8 67 68.7
Lalb_Chr14g0369401 Lupinus albus HOM05D004347 ORTHO05D005270 6.7e-16 87.4 67 68.7
Sabra05G0177200 Salix brachista HOM05D004347 ORTHO05D005270 6.7e-16 87.4 67 68.7
unitig_8.g4581 Utricularia gibba HOM05D004347 ORTHO05D005270 6.7e-16 87.4 67 67.2
CSS0031902 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 8.7e-16 87.0 67 67.2
CSS0033638 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 8.7e-16 87.0 67 67.2
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 8.7e-16 87.0 67 67.2
HanXRQChr05g0152041 Helianthus annuus HOM05D004347 ORTHO05D005270 8.7e-16 87.0 67 65.7
Lsat_1_v5_gn_6_14781 Lactuca sativa HOM05D004347 ORTHO05D005270 8.7e-16 87.0 67 67.2
TPR.G20180 Trifolium pratense HOM05D004347 ORTHO05D005270 8.7e-16 87.0 65 67.7
ECA233G5914 Erigeron canadensis HOM05D004347 ORTHO05D005270 1.1e-15 86.7 67 65.7
TPR.G12496 Trifolium pratense HOM05D004347 ORTHO05D005270 1.1e-15 86.7 67 67.2
TWI56G0865 Tripterygium wilfordii HOM05D004347 ORTHO05D005270 1.1e-15 86.7 66 68.2
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 1.5e-15 86.3 67 67.2
Phvul.009G059600 Phaseolus vulgaris HOM05D004347 ORTHO05D005270 1.5e-15 86.3 67 67.2
Glyma.04G030500 Glycine max HOM05D004347 ORTHO05D005270 1.9e-15 85.9 67 65.7
Glyma.06G030600 Glycine max HOM05D004347 ORTHO05D005270 1.9e-15 85.9 67 65.7
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 1.9e-15 85.9 67 65.7
Lj1g0017536 Lotus japonicus HOM05D004347 ORTHO05D005270 1.9e-15 85.9 67 67.2
TAR628G1165 Trochodendron aralioides HOM05D004347 ORTHO05D005270 1.9e-15 85.9 67 67.2
Ca_15501_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 67.2
ClCG05G018820 Citrullus lanatus HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 65.7
Gohir.A05G192600 Gossypium hirsutum HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 67.2
Nn5g29661 Nelumbo nucifera HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 64.2
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 65.7
VMungo1309G0178 Vigna mungo HOM05D004347 ORTHO05D005270 2.5e-15 85.5 67 67.2
Dinv36108 Davidia involucrata HOM05D004347 ORTHO05D005270 3.3e-15 85.1 67 65.7
FvH4_2g39540 Fragaria vesca HOM05D004347 ORTHO05D005270 3.3e-15 85.1 67 65.7
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.3e-15 85.1 67 65.7
Hma1.2p1_0203F.1_g086150 Hydrangea macrophylla HOM05D004347 ORTHO05D005270 3.3e-15 85.1 51 78.4
HPP92_000284 Vanilla planifolia HOM05D004347 ORTHO05D005270 3.3e-15 85.1 67 65.7
Actinidia29814 Actinidia chinensis HOM05D004347 ORTHO05D005270 4.3e-15 84.7 67 65.7
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 4.3e-15 84.7 67 65.7
Lj2A1046T54 Lonicera japonica HOM05D004347 ORTHO05D005270 4.3e-15 84.7 51 78.4
Medtr3g112050 Medicago truncatula HOM05D004347 ORTHO05D005270 4.3e-15 84.7 66 66.7
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 4.3e-15 84.7 67 65.7
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 5.6e-15 84.3 67 64.2
SGA_v2.0_scaffold1G00165 Striga asiatica HOM05D004347 ORTHO05D005270 5.6e-15 84.3 66 68.2
CBR_g28659 Chara braunii HOM05D004347 ORTHO05D005270 7.4e-15 84.0 67 65.7
Nitab4.5_0003265g0100 Nicotiana tabacum HOM05D004347 ORTHO05D005270 7.4e-15 84.0 67 64.2
FAN15G0129 Fragaria x ananassa HOM05D004347 ORTHO05D005270 9.6e-15 83.6 67 65.7
RcHm_v2.0_Chr6g0301371 Rosa chinensis HOM05D004347 ORTHO05D005270 9.6e-15 83.6 67 64.2
SMO298G0050 Selaginella moellendorffii HOM05D004347 ORTHO05D005270 9.6e-15 83.6 51 76.5
PGSC0003DMG400003741 Solanum tuberosum HOM05D004347 ORTHO05D005270 9.6e-15 83.6 67 64.2
Peaxi162Scf00140g00025 Petunia axillaris HOM05D004347 ORTHO05D005270 1.3e-14 83.2 94 52.1
Atru.chr13.439 Acer truncatum HOM05D004347 ORTHO05D005270 1.6e-14 82.8 67 64.2
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 1.6e-14 82.8 51 78.4
CDE02G4169 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 1.6e-14 82.8 66 63.6
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 1.6e-14 82.8 67 64.2
TAR376G0652 Trochodendron aralioides HOM05D004347 ORTHO05D005270 1.6e-14 82.8 67 64.2
AL2G35250 Arabidopsis lyrata HOM05D004347 ORTHO05D005270 2.1e-14 82.4 66 63.6
A07p28900 Brassica napus HOM05D004347 ORTHO05D005270 2.1e-14 82.4 66 63.6
Medtr1g022420 Medicago truncatula HOM05D004347 ORTHO05D005270 2.1e-14 82.4 65 63.1
Nitab4.5_0008031g0060 Nicotiana tabacum HOM05D004347 ORTHO05D005270 2.1e-14 82.4 67 62.7
Actinidia37998 Actinidia chinensis HOM05D004347 ORTHO05D005270 2.8e-14 82.0 67 64.2
BcaB02g07020 Brassica carinata HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
BcaB05g24901 Brassica carinata HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
BcaC08g45584 Brassica carinata HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
C06p32680 Brassica napus HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
BolC6t38392H Brassica oleracea HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
CARHR068670 Cardamine hirsuta HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
Peaxi162Scf00064g00534 Petunia axillaris HOM05D004347 ORTHO05D005270 2.8e-14 82.0 67 62.7
Psat6g009200 Pisum sativum HOM05D004347 ORTHO05D005270 2.8e-14 82.0 50 78.0
Sp5g30470 Schrenkiella parvula HOM05D004347 ORTHO05D005270 2.8e-14 82.0 66 63.6
SEGI_09245 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 2.8e-14 82.0 67 62.7
SEGI_25489 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 2.8e-14 82.0 67 62.7
Aa31LG4G5540 Aethionema arabicum HOM05D004347 ORTHO05D005270 3.7e-14 81.6 66 62.1
Solyc04g080610.3 Solanum lycopersicum HOM05D004347 ORTHO05D005270 3.7e-14 81.6 67 62.7
Sopen04g034200 Solanum pennellii HOM05D004347 ORTHO05D005270 3.7e-14 81.6 67 62.7
ATR0568G211 Amborella trichopoda HOM05D004347 ORTHO05D005270 4.8e-14 81.3 67 64.2
Mapoly0003s0042 Marchantia polymorpha HOM05D004347 ORTHO05D005270 4.8e-14 81.3 67 64.2
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 4.8e-14 81.3 67 64.2
Solyc12g089210.2 Solanum lycopersicum HOM05D004347 ORTHO05D005270 4.8e-14 81.3 67 61.2
Thhalv10018722m.g Eutrema salsugineum HOM05D004347 ORTHO05D005270 6.2e-14 80.9 66 62.1
vmacro04537 Vaccinium macrocarpon HOM05D004347 ORTHO05D005270 6.2e-14 80.9 67 64.2
AT1G75330 Arabidopsis thaliana HOM05D004347 ORTHO05D005270 8.1e-14 80.5 65 63.1
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 8.1e-14 80.5 67 61.2
Carub.0002s2216 Capsella rubella HOM05D004347 ORTHO05D005270 8.1e-14 80.5 65 63.1
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 8.1e-14 80.5 67 62.7
PSO063G7652 Papaver somniferum HOM05D004347 ORTHO05D005270 8.1e-14 80.5 59 71.2
Lj5g0006178 Lotus japonicus HOM05D004347 ORTHO05D005270 1.1e-13 80.1 65 61.5
PGSC0003DMG400015463 Solanum tuberosum HOM05D004347 ORTHO05D005270 1.1e-13 80.1 67 59.7
Nitab4.5_0001091g0050 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.4e-13 79.7 67 61.2
Sopen12g031090 Solanum pennellii HOM05D004347 ORTHO05D005270 1.4e-13 79.7 67 59.7
CAN.G847.3 Capsicum annuum HOM05D004347 ORTHO05D005270 1.8e-13 79.3 67 59.7
Rhsim07G0240900 Rhododendron simsii HOM05D004347 ORTHO05D005270 1.8e-13 79.3 67 62.7
RhsimUnG0052000 Rhododendron simsii HOM05D004347 ORTHO05D005270 1.8e-13 79.3 67 62.7
Pp3c15_7070 Physcomitrium patens HOM05D004347 ORTHO05D005270 2.4e-13 79.0 67 59.7
Nitab4.5_0004802g0040 Nicotiana tabacum HOM05D004347 ORTHO05D005270 3.1e-13 78.6 67 59.7
Pp3c9_2740 Physcomitrium patens HOM05D004347 ORTHO05D005270 4.5e-12 74.7 65 60.0
Pp3c9_2745 Physcomitrium patens HOM05D004347 ORTHO05D005270 4.5e-12 74.7 65 60.0
MCO01G430 Micromonas commoda HOM05D004347 ORTHO05D005270 2.5e-10 68.9 49 65.3
THA.LOC104811378 Tarenaya hassleriana HOM05D004347 ORTHO05D005270 3.5e-09 65.1 52 63.5
PRCOL_00003337 Prasinoderma coloniale HOM05D004347 ORTHO05D005270 1.0e-08 63.5 65 55.4
Cre12.g489700 Chlamydomonas reinhardtii HOM05D004347 ORTHO05D005270 5.1e-08 61.2 67 50.7


User provided reference genes

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