Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001310 Zea mays HOM05D004347 ORTHO05D005270 1.1e-83 313.2 149 100.0
Zm00001eb257230 Zea mays HOM05D004347 ORTHO05D005270 1.1e-83 313.2 149 100.0
Zm00001eb419090 Zea mays HOM05D004347 ORTHO05D005270 1.1e-83 313.2 149 100.0
Zm00001eb216710 Zea mays HOM05D004347 ORTHO05D005270 1.2e-80 303.1 149 96.6
Zm00001eb188330 Zea mays HOM05D004347 ORTHO05D005270 1.6e-77 292.7 147 94.6
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 2.2e-76 288.9 147 93.9
Zm00001eb126200 Zea mays HOM05D004347 ORTHO05D005270 1.6e-74 282.7 137 97.1
Zm00001eb252020 Zea mays HOM05D004347 ORTHO05D005270 2.4e-70 268.9 137 92.0
PGR031G1892 Punica granatum HOM05D004347 ORTHO05D005270 4.1e-70 268.1 147 83.7
TAR376G0652 Trochodendron aralioides HOM05D004347 ORTHO05D005270 7.7e-69 263.8 147 81.0
Os02g0704800 Oryza sativa ssp. japonica HOM05D004347 ORTHO05D005270 1.7e-68 262.7 147 84.4
ECA233G5914 Erigeron canadensis HOM05D004347 ORTHO05D005270 3.8e-68 261.5 147 81.6
Glyma.04G030500 Glycine max HOM05D004347 ORTHO05D005270 3.8e-68 261.5 146 81.5
Rhsim07G0240900 Rhododendron simsii HOM05D004347 ORTHO05D005270 5.0e-68 261.2 147 80.3
RhsimUnG0052000 Rhododendron simsii HOM05D004347 ORTHO05D005270 5.0e-68 261.2 147 80.3
Glyma.06G030600 Glycine max HOM05D004347 ORTHO05D005270 6.5e-68 260.8 146 80.8
HanXRQChr05g0152041 Helianthus annuus HOM05D004347 ORTHO05D005270 6.5e-68 260.8 147 81.0
VMungo1309G0178 Vigna mungo HOM05D004347 ORTHO05D005270 6.5e-68 260.8 146 82.2
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 8.6e-68 260.4 147 79.6
Lsat_1_v5_gn_6_14781 Lactuca sativa HOM05D004347 ORTHO05D005270 8.6e-68 260.4 147 81.6
Lalb_Chr14g0369401 Lupinus albus HOM05D004347 ORTHO05D005270 8.6e-68 260.4 146 81.5
CSS0031902 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 1.1e-67 260.0 147 81.0
CSS0033638 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 1.1e-67 260.0 147 81.0
Ciclev10001509m.g Citrus clementina HOM05D004347 ORTHO05D005270 1.1e-67 260.0 147 79.6
Gorai.009G200700 Gossypium raimondii HOM05D004347 ORTHO05D005270 1.1e-67 260.0 147 81.0
Gohir.D05G195800 Gossypium hirsutum HOM05D004347 ORTHO05D005270 1.5e-67 259.6 147 81.6
RcHm_v2.0_Chr6g0301371 Rosa chinensis HOM05D004347 ORTHO05D005270 1.9e-67 259.2 147 79.6
CDE02G4169 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 2.5e-67 258.8 147 79.6
Lj1g0017536 Lotus japonicus HOM05D004347 ORTHO05D005270 2.5e-67 258.8 146 82.2
Lalb_Chr24g0398901 Lupinus albus HOM05D004347 ORTHO05D005270 2.5e-67 258.8 146 80.8
MD15G1024200 Malus domestica HOM05D004347 ORTHO05D005270 2.5e-67 258.8 147 80.3
TAR628G1165 Trochodendron aralioides HOM05D004347 ORTHO05D005270 2.5e-67 258.8 147 80.3
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 2.5e-67 258.8 147 80.3
Ah.08g222650 Amaranthus hybridus HOM05D004347 ORTHO05D005270 3.2e-67 258.5 147 80.3
CsaV3_3G045350 Cucumis sativus L. HOM05D004347 ORTHO05D005270 4.2e-67 258.1 146 79.5
Nitab4.5_0004802g0040 Nicotiana tabacum HOM05D004347 ORTHO05D005270 4.2e-67 258.1 146 80.1
Prupe.1G376500 Prunus persica HOM05D004347 ORTHO05D005270 4.2e-67 258.1 147 78.9
Actinidia29814 Actinidia chinensis HOM05D004347 ORTHO05D005270 5.5e-67 257.7 147 78.9
CSS0015335 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 5.5e-67 257.7 147 79.6
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 5.5e-67 257.7 147 80.3
MBI18_g10579_MAGBIO Magnolia biondii HOM05D004347 ORTHO05D005270 5.5e-67 257.7 146 80.8
Potri.005G229400 Populus trichocarpa HOM05D004347 ORTHO05D005270 5.5e-67 257.7 147 79.6
DCAR_022470 Daucus carota HOM05D004347 ORTHO05D005270 7.2e-67 257.3 147 79.6
Peaxi162Scf00064g00534 Petunia axillaris HOM05D004347 ORTHO05D005270 7.2e-67 257.3 146 80.1
vmacro04537 Vaccinium macrocarpon HOM05D004347 ORTHO05D005270 7.2e-67 257.3 147 79.6
Ca_15501_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 9.5e-67 256.9 146 80.8
Duzib093G0814 Durio zibethinus HOM05D004347 ORTHO05D005270 9.5e-67 256.9 147 80.3
MD08G1028500 Malus domestica HOM05D004347 ORTHO05D005270 9.5e-67 256.9 147 79.6
Manes.05G157200 Manihot esculenta HOM05D004347 ORTHO05D005270 9.5e-67 256.9 147 78.9
Medtr3g112050 Medicago truncatula HOM05D004347 ORTHO05D005270 9.5e-67 256.9 146 80.8
Hund03153 Selenicereus undatus HOM05D004347 ORTHO05D005270 9.5e-67 256.9 147 79.6
CDE06G1278 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 1.2e-66 256.5 147 78.2
AUR62015395 Chenopodium quinoa HOM05D004347 ORTHO05D005270 1.2e-66 256.5 147 78.2
ClCG05G018820 Citrullus lanatus HOM05D004347 ORTHO05D005270 1.2e-66 256.5 146 78.8
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 1.2e-66 256.5 147 78.9
Gohir.A05G192600 Gossypium hirsutum HOM05D004347 ORTHO05D005270 1.2e-66 256.5 147 80.3
Thecc.08G030400 Theobroma cacao HOM05D004347 ORTHO05D005270 1.2e-66 256.5 147 78.9
Nitab4.5_0001091g0050 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.6e-66 256.1 146 80.1
TWI56G0865 Tripterygium wilfordii HOM05D004347 ORTHO05D005270 1.6e-66 256.1 147 78.9
AUR62002295 Chenopodium quinoa HOM05D004347 ORTHO05D005270 2.1e-66 255.8 147 77.6
FAN15G0129 Fragaria x ananassa HOM05D004347 ORTHO05D005270 2.1e-66 255.8 147 77.6
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 2.1e-66 255.8 147 77.6
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 2.1e-66 255.8 147 77.6
Phvul.009G059600 Phaseolus vulgaris HOM05D004347 ORTHO05D005270 2.1e-66 255.8 146 79.5
Sabra05G0177200 Salix brachista HOM05D004347 ORTHO05D005270 2.1e-66 255.8 147 79.6
PGSC0003DMG400003741 Solanum tuberosum HOM05D004347 ORTHO05D005270 2.1e-66 255.8 146 78.1
CAN.G847.3 Capsicum annuum HOM05D004347 ORTHO05D005270 2.8e-66 255.4 146 78.8
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 2.8e-66 255.4 147 78.2
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 2.8e-66 255.4 147 78.9
PGSC0003DMG400015463 Solanum tuberosum HOM05D004347 ORTHO05D005270 2.8e-66 255.4 146 79.5
Sopen12g031090 Solanum pennellii HOM05D004347 ORTHO05D005270 3.6e-66 255.0 146 79.5
Atru.chr13.439 Acer truncatum HOM05D004347 ORTHO05D005270 4.7e-66 254.6 147 78.2
Oeu031257.1 Olea europaea HOM05D004347 ORTHO05D005270 4.7e-66 254.6 147 77.6
ATR0568G211 Amborella trichopoda HOM05D004347 ORTHO05D005270 8.0e-66 253.8 146 78.1
FvH4_2g39540 Fragaria vesca HOM05D004347 ORTHO05D005270 8.0e-66 253.8 147 77.6
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 78.1
Psat5g016520 Pisum sativum HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 80.8
Sed0020994 Sechium edule HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 78.8
Solyc04g080610.3 Solanum lycopersicum HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 78.1
Sopen04g034200 Solanum pennellii HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 78.1
TPR.G13537 Trifolium pratense HOM05D004347 ORTHO05D005270 1.0e-65 253.4 146 80.8
Hma1.2p1_0203F.1_g086150 Hydrangea macrophylla HOM05D004347 ORTHO05D005270 1.4e-65 253.1 147 78.9
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 1.8e-65 252.7 146 78.1
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 2.3e-65 252.3 147 76.9
Lj2A1046T54 Lonicera japonica HOM05D004347 ORTHO05D005270 3.0e-65 251.9 146 78.1
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 4.0e-65 251.5 147 76.9
PSO210G5717 Papaver somniferum HOM05D004347 ORTHO05D005270 4.0e-65 251.5 147 78.2
Ah.07g198360 Amaranthus hybridus HOM05D004347 ORTHO05D005270 5.2e-65 251.1 147 78.9
Solyc12g089210.2 Solanum lycopersicum HOM05D004347 ORTHO05D005270 5.2e-65 251.1 146 78.8
arahy.Tifrunner.gnm1.ann1.S41V7E Arachis hypogaea HOM05D004347 ORTHO05D005270 8.9e-65 250.4 157 75.2
arahy.Tifrunner.gnm1.ann1.YLZT45 Arachis hypogaea HOM05D004347 ORTHO05D005270 8.9e-65 250.4 157 75.2
CiPaw.07G159300 Carya illinoinensis HOM05D004347 ORTHO05D005270 8.9e-65 250.4 146 77.4
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 8.9e-65 250.4 147 76.9
THA.LOC104811378 Tarenaya hassleriana HOM05D004347 ORTHO05D005270 8.9e-65 250.4 147 76.2
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 1.2e-64 250.0 147 76.9
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 1.5e-64 249.6 147 76.9
SGA_v2.0_scaffold1G00165 Striga asiatica HOM05D004347 ORTHO05D005270 1.5e-64 249.6 147 74.8
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 2.0e-64 249.2 147 74.8
HPP92_000284 Vanilla planifolia HOM05D004347 ORTHO05D005270 2.6e-64 248.8 147 74.8
Zm00001eb403320 Zea mays HOM05D004347 ORTHO05D005270 2.6e-64 248.8 124 95.2
CANSAT11G1506 Cannabis sativa HOM05D004347 ORTHO05D005270 3.4e-64 248.4 147 76.9
unitig_8.g4581 Utricularia gibba HOM05D004347 ORTHO05D005270 7.5e-64 247.3 146 77.4
EL10Ac3g05924 Beta vulgaris HOM05D004347 ORTHO05D005270 9.8e-64 246.9 146 76.7
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 9.8e-64 246.9 147 75.5
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 1.3e-63 246.5 147 74.1
Nitab4.5_0008031g0060 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.3e-63 246.5 146 75.3
BcaB02g07020 Brassica carinata HOM05D004347 ORTHO05D005270 1.7e-63 246.1 147 74.8
BcaC08g45584 Brassica carinata HOM05D004347 ORTHO05D005270 1.7e-63 246.1 147 74.8
A07p28900 Brassica napus HOM05D004347 ORTHO05D005270 1.7e-63 246.1 147 74.8
C06p32680 Brassica napus HOM05D004347 ORTHO05D005270 1.7e-63 246.1 147 74.8
BolC6t38392H Brassica oleracea HOM05D004347 ORTHO05D005270 1.7e-63 246.1 147 74.8
Nitab4.5_0003265g0100 Nicotiana tabacum HOM05D004347 ORTHO05D005270 2.2e-63 245.7 146 74.7
PSO063G7652 Papaver somniferum HOM05D004347 ORTHO05D005270 4.9e-63 244.6 147 76.2
Sp5g30470 Schrenkiella parvula HOM05D004347 ORTHO05D005270 8.3e-63 243.8 147 74.1
Thhalv10018722m.g Eutrema salsugineum HOM05D004347 ORTHO05D005270 1.1e-62 243.4 147 74.1
SEGI_09245 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 1.1e-62 243.4 147 74.8
SEGI_25489 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 1.1e-62 243.4 147 74.8
CARHR068670 Cardamine hirsuta HOM05D004347 ORTHO05D005270 1.8e-62 242.7 147 74.1
Aa31LG4G5540 Aethionema arabicum HOM05D004347 ORTHO05D005270 2.4e-62 242.3 147 73.5
Lj5g0006178 Lotus japonicus HOM05D004347 ORTHO05D005270 3.1e-62 241.9 146 75.3
MELO3C003814.2 Cucumis melo HOM05D004347 ORTHO05D005270 4.1e-62 241.5 135 80.0
Sc15g0007070 Simmondsia chinensis HOM05D004347 ORTHO05D005270 4.1e-62 241.5 137 78.1
AL2G35250 Arabidopsis lyrata HOM05D004347 ORTHO05D005270 5.4e-62 241.1 147 72.1
AT1G75330 Arabidopsis thaliana HOM05D004347 ORTHO05D005270 9.2e-62 240.4 146 73.3
Carub.0002s2216 Capsella rubella HOM05D004347 ORTHO05D005270 1.2e-61 240.0 146 74.0
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 1.2e-61 240.0 137 79.6
CBR_g28659 Chara braunii HOM05D004347 ORTHO05D005270 2.0e-61 239.2 146 76.7
SMO298G0050 Selaginella moellendorffii HOM05D004347 ORTHO05D005270 2.0e-61 239.2 146 74.7
TPR.G20180 Trifolium pratense HOM05D004347 ORTHO05D005270 2.3e-60 235.7 146 73.3
Medtr1g022420 Medicago truncatula HOM05D004347 ORTHO05D005270 8.6e-60 233.8 146 72.6
Pp3c15_7070 Physcomitrium patens HOM05D004347 ORTHO05D005270 1.1e-59 233.4 147 72.1
Pp3c9_2740 Physcomitrium patens HOM05D004347 ORTHO05D005270 5.6e-59 231.1 147 72.1
Pp3c9_2745 Physcomitrium patens HOM05D004347 ORTHO05D005270 5.6e-59 231.1 147 72.1
C02p32480 Brassica napus HOM05D004347 ORTHO05D005270 2.1e-58 229.2 147 69.4
Mapoly0003s0042 Marchantia polymorpha HOM05D004347 ORTHO05D005270 6.1e-58 227.6 147 70.7
BolC2t09280H Brassica oleracea HOM05D004347 ORTHO05D005270 8.9e-57 223.8 147 68.7
Psat6g009200 Pisum sativum HOM05D004347 ORTHO05D005270 2.9e-55 218.8 147 68.0
Peaxi162Scf00140g00025 Petunia axillaris HOM05D004347 ORTHO05D005270 4.9e-55 218.0 142 69.7
BcaC03g15560 Brassica carinata HOM05D004347 ORTHO05D005270 1.7e-52 209.5 147 65.3
Cre12.g489700 Chlamydomonas reinhardtii HOM05D004347 ORTHO05D005270 5.6e-51 204.5 146 66.4
Ah.07g201940 Amaranthus hybridus HOM05D004347 ORTHO05D005270 9.5e-51 203.8 164 61.0
MCO01G430 Micromonas commoda HOM05D004347 ORTHO05D005270 8.0e-50 200.7 149 60.4
PRCOL_00003337 Prasinoderma coloniale HOM05D004347 ORTHO05D005270 5.2e-49 198.0 147 61.2
BcaB05g24901 Brassica carinata HOM05D004347 ORTHO05D005270 2.0e-48 196.1 147 63.9
Nn5g29661 Nelumbo nucifera HOM05D004347 ORTHO05D005270 1.2e-45 186.8 111 76.6
Dinv36108 Davidia involucrata HOM05D004347 ORTHO05D005270 4.6e-45 184.9 108 77.8
Cfa022292 Carpinus fangiana HOM05D004347 ORTHO05D005270 1.2e-24 117.1 157 41.4
Actinidia27745 Actinidia chinensis HOM05D004347 ORTHO05D005270 2.0e-24 116.3 72 75.0
CAN.G312.9 Capsicum annuum HOM05D004347 ORTHO05D005270 3.4e-24 115.5 62 79.0
Lj2A915G14 Lonicera japonica HOM05D004347 ORTHO05D005270 1.6e-21 106.7 123 48.0
Ca_29133_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 7.6e-16 87.8 149 35.6
Potri.002G033701 Populus trichocarpa HOM05D004347 ORTHO05D005270 1.3e-15 87.0 60 68.3
PSO409G0040 Papaver somniferum HOM05D004347 ORTHO05D005270 2.5e-11 72.8 47 66.0
Ca_31259_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 6.2e-10 68.2 93 37.6
Actinidia37998 Actinidia chinensis HOM05D004347 ORTHO05D005270 1.1e-09 67.4 140 34.3


User provided reference genes

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