Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.5e-289 998.0 497 100.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.7e-274 948.7 497 94.6
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.7e-269 932.2 497 92.2
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.6e-262 906.7 494 89.7
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.9e-260 902.1 492 89.8
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 5.4e-260 900.6 497 88.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.5e-259 897.9 497 89.3
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-258 896.0 495 88.7
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 8.7e-258 893.3 497 88.3
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.3e-257 891.3 492 88.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.6e-257 890.6 492 88.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.0e-246 855.5 494 85.0
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 5.8e-246 854.0 493 84.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 6.5e-245 850.5 493 84.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.4e-244 849.4 493 84.6
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 6.7e-242 840.5 494 83.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 3.3e-241 838.2 493 82.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.3e-240 836.3 492 83.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.8e-240 834.3 492 82.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 6.2e-240 833.9 489 83.4
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 8.2e-240 833.6 494 82.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 8.2e-240 833.6 492 82.1
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-239 833.2 495 82.8
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.8e-239 832.4 491 83.3
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 3.1e-239 831.6 492 82.9
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-239 831.2 492 81.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.9e-239 830.5 494 82.0
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-238 828.6 493 82.2
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-238 828.2 494 81.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.5e-238 827.8 492 81.5
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.6e-238 827.0 493 82.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 7.6e-238 827.0 494 81.6
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.0e-237 826.6 493 81.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.2e-237 825.5 492 81.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.9e-237 825.1 494 81.8
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 2.9e-237 825.1 492 81.1
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.8e-237 824.7 493 82.4
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 5.0e-237 824.3 492 81.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.5e-237 823.9 493 81.7
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 9.3e-236 820.1 495 81.4
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 9.3e-236 820.1 493 81.5
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.6e-235 819.3 495 80.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.6e-235 819.3 494 81.6
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.6e-235 817.8 494 80.8
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 6.1e-235 817.4 493 80.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 81.2
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.3e-234 815.5 493 80.7
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 6.7e-234 813.9 492 81.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 6.7e-234 813.9 493 81.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 8.7e-234 813.5 494 80.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.7e-234 813.5 494 80.6
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.1e-233 813.1 493 80.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.4e-233 810.4 486 81.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.3e-232 809.7 496 80.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.2e-232 808.9 493 79.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 6.3e-232 807.4 493 79.3
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.8e-231 805.8 492 79.9
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.8e-231 805.8 493 78.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 4.1e-231 804.7 528 76.5
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 5.3e-231 804.3 493 78.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 9.0e-231 803.5 493 79.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.5e-230 802.7 486 80.2
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.0e-230 802.4 493 80.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.6e-230 802.0 493 79.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.2e-229 798.9 498 78.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.9e-229 798.5 506 78.1
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.8e-229 798.1 493 79.1
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.5e-229 797.3 492 79.1
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 8.5e-229 797.0 487 80.1
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 8.5e-229 797.0 487 80.3
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.1e-228 796.6 487 80.1
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.9e-228 795.8 487 80.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.9e-228 795.8 479 81.2
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.5e-228 795.4 532 75.2
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.2e-228 794.7 508 77.4
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.1e-227 792.3 487 79.9
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-227 792.3 487 79.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.1e-227 792.3 496 79.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.7e-227 792.0 493 78.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.6e-227 791.2 494 79.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.1e-227 790.8 494 78.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-226 789.6 486 78.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.4e-226 789.6 493 77.5
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.8e-226 789.3 493 78.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.3e-226 788.9 486 79.0
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 5.1e-226 787.7 488 78.7
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.7e-226 787.3 488 79.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 6.7e-226 787.3 486 78.2
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 6.7e-226 787.3 489 78.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.3e-225 785.0 486 78.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.3e-225 784.6 487 78.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.2e-224 782.3 494 77.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.8e-224 781.9 486 78.6
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 3.7e-224 781.6 496 77.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-224 781.6 484 78.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 4.8e-224 781.2 492 78.7
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-223 779.6 488 77.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-223 779.2 486 78.0
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.8e-223 779.2 509 76.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 5.3e-223 777.7 470 80.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.2e-219 766.5 483 78.5
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.0e-218 763.5 490 74.7
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.6e-217 758.8 489 75.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.6e-214 748.8 440 82.0
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.8e-210 736.1 437 82.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.3e-210 735.7 435 82.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.2e-208 729.2 389 92.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.8e-208 728.8 492 73.6
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.7e-208 728.4 433 80.8
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 4.1e-207 724.9 488 73.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.0e-206 722.6 442 79.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.8e-205 718.4 441 78.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 6.1e-203 711.1 439 80.4
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.2e-202 708.0 484 74.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 9.4e-196 687.2 500 71.4
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 4.1e-191 671.8 486 68.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.0e-182 642.9 492 67.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.7e-182 642.5 497 68.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 9.5e-180 634.0 405 75.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.2e-178 628.2 471 69.4
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.9e-176 622.5 382 79.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.3e-173 612.8 380 79.7
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.6e-173 611.3 508 62.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 6.4e-168 594.7 391 77.2
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.6e-158 563.5 345 78.8
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.0e-158 561.6 462 65.2
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 9.3e-151 537.7 382 70.9
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 3.8e-144 515.8 537 52.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-136 490.7 267 90.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.5e-121 440.7 465 51.2
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.8e-114 417.2 245 83.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.4e-114 416.8 239 84.1
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-105 387.9 228 83.3
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.9e-105 385.6 238 77.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 7.7e-105 385.2 436 50.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.5e-103 380.2 301 64.5
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.7e-101 372.1 251 70.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.4e-100 369.4 481 46.8
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.2e-96 357.1 303 65.7
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.2e-95 352.1 235 73.2
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-90 336.3 309 57.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 8.3e-83 312.0 240 64.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.4e-77 294.7 254 64.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.6e-70 271.2 162 79.6
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.5e-55 220.7 259 50.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.4e-50 204.1 148 65.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 5.2e-45 186.4 103 87.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-44 185.3 297 40.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-43 181.4 151 64.9
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.9e-43 180.6 96 89.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 9.2e-42 175.6 143 60.8
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.1e-39 168.7 104 78.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.5e-39 167.5 115 67.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.0e-32 144.1 75 90.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 5.1e-32 143.3 85 84.7
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.9e-31 141.4 130 55.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 4.0e-29 133.7 157 48.4
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 7.6e-28 129.4 79 78.5
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.5e-20 105.1 93 60.2
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.3e-16 91.3 70 58.6
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 6.9e-13 79.7 61 70.5
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 8.4e-11 72.8 36 88.9
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 3.5e-09 67.4 39 71.8
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 4.3e-07 60.5 38 78.9


User provided reference genes

Program Settings