Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 2375.9 1123 100.0
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 2263.0 1120 94.1
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 2185.2 1120 90.6
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 2019.6 1123 82.7
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 2014.2 1123 82.5
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 2002.6 1123 82.5
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 2001.9 1114 82.7
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1998.8 1121 81.8
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1982.2 1123 81.3
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1962.2 1123 80.9
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1961.0 1123 80.9
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1927.9 1075 82.2
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1794.6 1110 72.8
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1779.6 1113 72.9
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1774.2 1112 72.2
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1770.7 1113 71.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1769.6 1113 71.7
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1766.1 1120 71.1
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1765.7 1113 71.6
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1764.2 1113 71.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1755.3 1113 72.1
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1118 72.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1748.8 1120 71.0
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1746.5 1120 70.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1738.0 1110 71.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1734.2 1121 70.7
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1733.0 1113 70.9
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1728.8 1118 70.1
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1726.8 1107 70.8
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1724.5 1112 70.7
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1719.9 1103 70.5
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1718.0 1101 70.3
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1714.9 1121 70.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 1122 69.4
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1116 69.5
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1701.8 1114 69.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1691.0 1098 69.3
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1691.0 1108 69.8
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1114 69.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1126 68.7
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1679.5 1110 68.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1119 68.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1676.4 1080 70.6
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1676.4 1104 68.6
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1674.8 1104 68.8
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1673.3 1104 68.8
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1671.8 1069 70.5
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1670.2 1110 68.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1667.9 1127 67.6
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1666.7 1119 68.3
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1110 67.9
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1664.4 1119 67.7
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1095 69.2
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1107 68.7
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1103 68.4
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1119 67.7
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1662.5 1097 69.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1660.6 1109 67.3
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1122 68.1
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1224 63.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1652.5 1098 67.9
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1652.1 1120 67.5
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1648.3 1120 67.8
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1646.7 1111 67.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1646.7 1120 68.3
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1631.3 1123 65.7
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1118 66.9
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1626.3 1123 65.8
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1621.3 1120 67.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1616.7 1103 66.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1615.9 1114 65.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1101 67.4
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1607.0 1127 65.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1605.1 1058 69.4
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1602.4 1099 66.1
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1595.1 992 73.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1594.7 1098 66.0
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1580.1 1115 65.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1573.5 1118 64.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1572.4 1114 64.6
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1566.6 1145 64.1
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1550.4 1104 63.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1547.3 1128 63.1
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1480.7 1073 62.3
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1468.4 1165 59.9
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1453.3 1003 66.9
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1406.3 901 72.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1378.6 918 68.5
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1293.1 1135 53.1
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1262.7 1120 54.3
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1248.0 1110 53.2
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1233.8 833 68.2
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1229.2 1041 55.9
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1222.2 835 67.1
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1171.0 749 70.0
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1155.6 1123 50.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1124.8 739 69.1
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1105.9 761 66.5
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1102.4 660 75.6
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.8e-298 1029.6 1130 46.3
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 9.0e-279 964.1 691 65.0
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 4.7e-251 872.1 694 60.2
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 9.5e-236 821.2 500 75.2
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.2e-217 761.1 541 64.9
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.9e-216 756.5 541 64.9
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.9e-199 700.7 568 56.7
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 7.6e-169 599.0 1503 29.7
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 5.9e-153 546.2 393 65.1
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 2.6e-148 530.8 604 45.5
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 5.0e-136 490.0 282 77.7
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.5e-116 425.2 240 77.5
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.1e-111 409.1 589 41.1
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 6.2e-110 403.3 827 32.4
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.9e-106 391.7 274 67.9
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 8.1e-86 323.2 194 73.7
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 2.0e-84 318.5 199 71.4
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 7.1e-82 310.1 259 54.4
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 6.2e-78 297.0 174 78.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.8e-75 287.7 208 62.5
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.2e-66 257.7 156 69.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 9.0e-61 240.0 169 67.5
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 3.8e-59 234.6 130 74.6
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.4e-58 232.6 208 51.4
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 9.4e-50 203.4 132 66.7
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 9.4e-42 176.8 116 64.7
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.2e-34 151.4 105 59.0
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-31 142.9 81 76.5
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.6e-31 142.1 89 69.7
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.3e-31 141.7 138 47.1
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 4.4e-31 141.4 175 44.0
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.8e-30 138.7 192 39.6
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.8e-29 136.0 142 54.9
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-28 132.1 95 61.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.5e-28 131.7 138 46.4
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 5.9e-28 131.0 134 47.0
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 5.9e-28 131.0 132 51.5
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-27 129.4 135 46.7
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 8.8e-24 117.1 119 57.1
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.1e-21 110.2 96 53.1
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 7.7e-20 104.0 53 83.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.7e-19 102.8 139 48.9
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 1.1e-18 100.1 66 60.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.7e-17 95.5 100 49.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 7.0e-13 80.9 84 45.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 2.0e-12 79.3 44 70.5
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.5e-12 78.2 61 57.4
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 7.7e-12 77.4 44 68.2
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 2.9e-11 75.5 50 62.0
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.8e-11 75.1 44 68.2
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.5e-10 73.2 47 61.7
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 3.3e-10 72.0 60 60.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 3.3e-10 72.0 44 63.6


User provided reference genes

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