Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 2070.8 975 100.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1961.8 975 94.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1875.5 964 91.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1838.2 964 89.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1781.5 969 86.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1747.3 955 85.5
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1746.9 962 84.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1745.7 962 84.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1745.3 965 84.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1697.9 957 82.1
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1693.3 959 81.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1686.4 959 81.8
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1680.2 957 81.2
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1676.0 965 81.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1671.0 971 80.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1666.7 966 79.9
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1666.0 957 81.4
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1665.6 956 81.4
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1652.5 966 79.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1652.5 959 79.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1641.7 957 80.0
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1641.3 955 80.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 964 79.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 974 78.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1633.2 964 78.6
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1629.8 956 79.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1628.6 964 78.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 967 78.1
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1626.3 969 78.3
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 970 78.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 964 77.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 966 78.4
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 964 78.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 966 78.3
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 960 78.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1607.4 955 78.3
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 979 77.3
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1601.6 964 77.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 967 77.5
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 965 76.8
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 966 76.8
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 963 77.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 963 77.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1595.5 966 76.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 967 75.9
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 969 77.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 966 76.5
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 969 77.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 966 76.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1577.8 967 76.4
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1573.5 968 75.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 970 76.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 970 76.2
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1571.2 975 74.6
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 964 75.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1566.6 964 75.1
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 964 75.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1562.7 966 74.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 967 75.8
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 955 75.5
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 963 75.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 967 74.6
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1556.6 956 75.8
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 967 74.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 955 76.1
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 965 74.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1542.3 963 74.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 966 74.2
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 965 74.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1534.2 957 74.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 966 74.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 967 74.4
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 965 72.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 963 73.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1527.3 967 73.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1522.7 964 73.8
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 966 73.6
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1520.8 919 77.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 964 73.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 970 72.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 960 74.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1510.7 936 75.9
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1503.0 968 73.5
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 972 71.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1502.3 963 72.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 973 72.6
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 962 73.2
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1483.4 969 71.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1483.0 962 71.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 970 71.8
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 966 71.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1469.9 957 72.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1464.9 963 70.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1459.9 959 71.0
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 869 77.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 991 70.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 966 70.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1435.2 875 75.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 963 69.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1428.7 972 69.4
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1426.0 965 70.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 980 69.0
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1416.7 959 69.4
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 967 68.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 959 69.8
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1412.9 959 69.6
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 961 69.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1405.2 964 68.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1404.8 842 77.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 965 68.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 965 68.7
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1397.5 961 69.3
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 850 75.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1392.1 961 69.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1391.3 961 68.7
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1382.5 962 68.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1381.3 762 83.1
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1354.7 976 66.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1353.2 780 81.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1342.4 997 63.7
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1317.4 961 66.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1292.3 965 65.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1269.2 965 63.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1241.5 761 76.1
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1235.3 840 68.7
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1231.1 779 75.0
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1169.5 784 70.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.7e-310 1069.3 970 53.8
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.2e-308 1060.8 678 74.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 6.6e-302 1040.8 956 54.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.0e-286 990.3 702 68.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.5e-279 965.3 963 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.1e-275 952.2 955 50.4
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.1e-267 925.6 970 49.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.3e-251 871.7 556 73.9
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 3.3e-237 825.9 841 50.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.9e-198 694.9 398 77.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.8e-127 460.7 286 74.8
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-118 431.0 343 63.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 3.1e-118 430.6 404 56.4
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 9.7e-112 409.1 373 58.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 6.5e-100 369.8 213 78.4
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 6.4e-87 326.6 186 80.1
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 5.4e-86 323.6 275 59.6
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.0e-86 323.2 202 73.3
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.0e-77 293.5 159 81.8
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.6e-67 260.4 143 80.4
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-64 252.3 156 73.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.4e-64 250.8 211 56.9
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.5e-61 241.1 731 28.5
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.1e-54 219.5 379 38.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 6.0e-45 187.2 94 83.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 3.7e-42 177.9 150 58.7
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 6.2e-42 177.2 946 24.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 7.6e-40 170.2 140 60.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.1e-35 156.4 158 49.4
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 4.3e-35 154.5 148 53.4
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 8.4e-31 140.2 92 71.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.1e-30 137.1 89 74.2
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.6e-29 136.0 126 51.6
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.8e-26 124.4 88 63.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-24 117.9 183 38.8
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 2.9e-23 115.2 184 37.0
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 8.8e-20 103.6 118 46.6
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 6.3e-18 97.4 128 43.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 600 23.3
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 7.7e-16 90.5 114 45.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.5e-11 76.3 46 69.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 6.3e-10 70.9 71 53.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.4e-09 68.9 76 46.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.9e-07 62.0 48 62.5
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 4.2e-06 58.2 44 61.4


User provided reference genes

Program Settings