Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 7.8e-170 600.5 333 100.0
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 6.6e-153 544.3 332 88.0
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.0e-129 467.2 328 77.4
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 9.6e-128 460.7 329 77.2
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 5.0e-116 421.8 327 71.3
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 3.1e-110 402.5 324 69.1
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 5.9e-109 398.3 330 66.4
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 7.7e-109 397.9 326 66.9
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 9.4e-107 391.0 327 62.7
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 5.3e-102 375.2 332 65.7
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.7e-95 352.4 328 58.5
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 8.2e-95 351.3 324 59.9
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 3.1e-94 349.4 329 57.8
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 7.0e-94 348.2 331 57.7
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 9.1e-94 347.8 329 58.1
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 9.1e-94 347.8 328 57.9
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 3.5e-93 345.9 329 58.4
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 5.9e-93 345.1 329 56.8
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 7.7e-93 344.7 324 60.5
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 8.5e-92 341.3 325 57.8
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 1.1e-91 340.9 328 57.9
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 1.5e-91 340.5 324 57.4
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 3.2e-91 339.3 328 59.1
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 7.2e-91 338.2 328 55.8
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 7.2e-91 338.2 253 70.4
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.4e-89 334.0 331 56.2
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.3e-89 333.2 330 56.1
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 2.3e-89 333.2 331 55.9
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 4.0e-89 332.4 330 56.1
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 4.0e-89 332.4 331 55.6
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 6.8e-89 331.6 330 55.5
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 6.8e-89 331.6 330 55.5
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 8.8e-89 331.3 316 58.9
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 8.8e-89 331.3 330 57.0
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 1.2e-88 330.9 334 54.8
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.2e-88 330.9 330 55.8
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.2e-88 330.9 330 55.8
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 1.2e-88 330.9 326 55.5
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.5e-88 330.5 331 55.9
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 4.4e-88 328.9 329 55.3
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 7.5e-88 328.2 330 55.8
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 1.3e-87 327.4 389 50.4
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.7e-87 327.0 328 56.7
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 4.8e-87 325.5 329 55.6
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 4.8e-87 325.5 330 55.8
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 8.3e-87 324.7 334 53.9
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 1.1e-86 324.3 329 54.4
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 1.8e-86 323.6 324 55.6
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 1.2e-85 320.9 328 53.0
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 1.0e-84 317.8 329 52.0
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.0e-84 317.8 324 55.6
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.5e-83 313.2 329 52.6
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.6e-82 310.5 328 54.0
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.1e-82 310.1 329 52.9
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 3.6e-82 309.3 329 51.4
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 8.0e-82 308.1 329 53.5
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 1.8e-81 307.0 327 52.3
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 3.0e-81 306.2 329 51.4
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 6.3e-79 298.5 329 50.5
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 1.8e-78 297.0 329 50.2
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 2.4e-78 296.6 323 51.1
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 4.1e-78 295.8 329 49.5
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 4.1e-78 295.8 329 48.9
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 1.6e-77 293.9 347 48.7
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 2.0e-77 293.5 326 50.6
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 5.9e-77 292.0 405 43.7
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 1.0e-76 291.2 328 48.5
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 1.7e-76 290.4 331 49.5
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 5.0e-76 288.9 382 47.6
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 2.5e-75 286.6 323 50.2
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 7.2e-75 285.0 386 44.8
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 3.6e-74 282.7 325 47.4
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 8.0e-74 281.6 326 48.8
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.4e-73 280.8 326 48.2
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 2.0e-72 276.9 214 67.3
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 2.0e-72 276.9 336 48.5
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 2.0e-72 276.9 327 46.2
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 2.0e-72 276.9 327 46.2
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 2.8e-71 273.1 326 46.0
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 6.3e-71 271.9 326 46.0
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.4e-70 270.8 333 49.2
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 1.8e-70 270.4 298 48.0
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.1e-70 269.2 338 48.8
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.1e-70 269.2 338 48.8
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 1.6e-69 267.3 326 44.5
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 2.0e-69 266.9 326 46.0
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 5.0e-68 262.3 321 46.4
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 5.0e-68 262.3 320 46.9
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 1.5e-67 260.8 327 45.6
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 2.5e-67 260.0 326 45.1
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 2.5e-67 260.0 326 45.1
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 4.3e-67 259.2 326 45.1
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 7.3e-67 258.5 325 45.8
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.2e-66 257.7 325 44.6
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 2.1e-66 256.9 325 45.5
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.8e-66 256.5 327 45.3
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 3.4e-64 249.6 329 46.5
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 5.8e-64 248.8 330 45.8
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 7.5e-64 248.4 338 45.9
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 1.4e-54 217.6 215 54.0
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 3.9e-52 209.5 227 49.8
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.5e-43 181.0 333 36.9
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 1.8e-41 174.1 339 33.6
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 2.5e-35 153.7 325 32.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.8e-34 150.2 330 35.2
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 9.0e-33 145.2 253 36.4
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 4.4e-32 142.9 228 37.7
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 4.8e-18 96.3 163 39.9
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 1.5e-16 91.3 338 26.9
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 3.3e-11 73.6 258 26.0
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 9.6e-11 72.0 258 25.6
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 9.6e-11 72.0 258 26.0
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.1e-10 70.9 80 40.0
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.8e-10 70.5 264 25.4
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 2.8e-10 70.5 264 24.6
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.8e-10 70.5 264 26.5
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 4.8e-10 69.7 263 23.6
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.4e-09 68.2 263 25.5
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 2.4e-09 67.4 220 25.9
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 3.1e-09 67.0 257 23.7
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 3.1e-09 67.0 95 50.5
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 5.3e-09 66.2 249 25.7
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 9.0e-09 65.5 257 24.9
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 1.0e-07 62.0 226 23.0
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 2.2e-07 60.8 175 24.6
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.2e-07 60.8 130 25.4
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 2.9e-07 60.5 224 22.3
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 227 22.0
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.9e-07 60.5 221 23.5
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 2.9e-07 60.5 148 24.3
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 3.8e-07 60.1 223 20.2
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 3.8e-07 60.1 223 20.2
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 5.0e-07 59.7 225 21.8
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 6.5e-07 59.3 227 23.3
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 6.5e-07 59.3 225 22.2
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 6.5e-07 59.3 234 20.5
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 6.5e-07 59.3 223 21.1
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 1.1e-06 58.5 130 27.7
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.4e-06 58.2 169 23.7
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 1.4e-06 58.2 169 23.7
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 1.9e-06 57.8 225 20.4
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 2.5e-06 57.4 224 19.6
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 2.5e-06 57.4 224 19.6
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 2.5e-06 57.4 227 21.6
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 2.5e-06 57.4 127 26.8
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 3.2e-06 57.0 228 22.4
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 3.2e-06 57.0 169 26.0
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.2e-06 57.0 169 23.1
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 3.2e-06 57.0 132 25.0
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 4.2e-06 56.6 231 21.6
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 4.2e-06 56.6 169 23.1
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 5.5e-06 56.2 220 22.7
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 7.2e-06 55.8 225 20.9
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 7.2e-06 55.8 170 24.1
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 7.2e-06 55.8 227 22.0
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 7.2e-06 55.8 226 21.7
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 7.2e-06 55.8 169 24.9
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 9.3e-06 55.5 143 24.5
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 9.3e-06 55.5 169 23.1
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 9.3e-06 55.5 111 25.2


User provided reference genes

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