Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0464G0319 Vigna mungo HOM05D005981 ORTHO05D007551 3.3e-71 271.6 132 100.0
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 1.8e-40 169.5 107 82.2
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 3.9e-40 168.3 113 77.0
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 8.2e-22 107.5 115 60.0
Lalb_Chr03g0035891 Lupinus albus HOM05D005981 ORTHO05D007551 1.1e-21 107.1 122 54.1
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 5.3e-21 104.8 115 59.1
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 7.7e-20 100.9 115 55.7
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 7.2e-18 94.4 123 48.0
Haze_17917 Corylus avellana HOM05D005981 ORTHO05D007551 2.1e-17 92.8 133 45.1
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 1.4e-16 90.1 91 60.4
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 2.3e-16 89.4 105 46.7
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 5.2e-16 88.2 66 68.2
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.0e-15 86.3 105 44.8
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.6e-15 85.9 105 44.8
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 4.4e-15 85.1 83 53.0
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 4.4e-15 85.1 90 50.0
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 4.4e-15 85.1 122 45.9
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 4.4e-15 85.1 90 54.4
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 7.4e-15 84.3 105 44.8
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 7.4e-15 84.3 86 50.0
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 9.7e-15 84.0 122 44.3
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 1.3e-14 83.6 47 78.7
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 1.3e-14 83.6 47 78.7
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 1.3e-14 83.6 74 55.4
Dinv41690 Davidia involucrata HOM05D005981 ORTHO05D007551 1.7e-14 83.2 64 67.2
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 2.2e-14 82.8 130 45.4
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 2.2e-14 82.8 130 45.4
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 2.2e-14 82.8 84 51.2
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 2.2e-14 82.8 95 46.3
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 2.2e-14 82.8 83 55.4
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 2.8e-14 82.4 80 53.8
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 2.8e-14 82.4 83 53.0
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 2.8e-14 82.4 69 58.0
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 3.7e-14 82.0 47 78.7
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 3.7e-14 82.0 47 78.7
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 4.8e-14 81.6 140 42.1
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 4.8e-14 81.6 80 52.5
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 4.8e-14 81.6 47 78.7
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 4.8e-14 81.6 45 82.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.8e-14 81.6 45 82.2
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 4.8e-14 81.6 98 45.9
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 8.2e-14 80.9 98 45.9
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 1.1e-13 80.5 69 56.5
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.1e-13 80.5 51 70.6
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 1.1e-13 80.5 82 51.2
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 1.4e-13 80.1 86 48.8
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 1.4e-13 80.1 95 48.4
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 2.4e-13 79.3 45 80.0
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 2.4e-13 79.3 90 54.4
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 4.1e-13 78.6 86 54.7
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 5.3e-13 78.2 66 57.6
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 5.3e-13 78.2 86 54.7
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 5.3e-13 78.2 86 54.7
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 1.2e-12 77.0 60 61.7
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 1.2e-12 77.0 46 76.1
Lsat_1_v5_gn_3_113600 Lactuca sativa HOM05D005981 ORTHO05D007551 1.2e-12 77.0 44 75.0
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 1.6e-12 76.6 46 73.9
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 2.0e-12 76.3 66 57.6
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 2.0e-12 76.3 45 75.6
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 2.6e-12 75.9 44 77.3
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 2.6e-12 75.9 103 43.7
TAR381G0932 Trochodendron aralioides HOM05D005981 ORTHO05D007551 2.6e-12 75.9 111 45.9
Ca_13999_v3 Cicer arietinum L. HOM05D002058 ORTHO05D009216 3.5e-12 75.5 46 80.4
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 3.5e-12 75.5 46 80.4
Ca_27969_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 3.5e-12 75.5 46 80.4
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 4.5e-12 75.1 76 51.3
Lsat_1_v5_gn_3_113620 Lactuca sativa HOM05D005981 ORTHO05D007551 4.5e-12 75.1 48 68.8
Lsat_1_v5_gn_7_7380 Lactuca sativa HOM05D005981 ORTHO05D007551 4.5e-12 75.1 48 68.8
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 7.7e-12 74.3 45 75.6
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 1.0e-11 73.9 99 44.4
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 1.0e-11 73.9 119 42.9
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 1.7e-11 73.2 46 71.7
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 1.7e-11 73.2 75 56.0
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 2.2e-11 72.8 86 46.5
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 2.9e-11 72.4 45 68.9
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 2.9e-11 72.4 45 68.9
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 2.9e-11 72.4 64 57.8
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 2.9e-11 72.4 45 73.3
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 3.8e-11 72.0 108 41.7
Ah.05g178000 Amaranthus hybridus HOM05D005981 ORTHO05D007551 5.0e-11 71.6 45 68.9
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 5.0e-11 71.6 122 39.3
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 6.5e-11 71.2 42 78.6
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 6.5e-11 71.2 42 78.6
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 6.5e-11 71.2 69 55.1
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 1.9e-10 69.7 44 70.5
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 2.5e-10 69.3 43 74.4
Cpa.g.sc66.54 Carica papaya HOM05D005981 ORTHO05D007551 2.5e-10 69.3 45 68.9
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 3.2e-10 68.9 54 59.3
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 4.2e-10 68.6 54 57.4
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 7.2e-10 67.8 105 40.0
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 7.2e-10 67.8 47 68.1
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 1.6e-09 66.6 47 61.7
HPP92_000083 Vanilla planifolia HOM05D005981 ORTHO05D007551 1.6e-09 66.6 51 56.9
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 8.0e-09 64.3 43 65.1
Zm00001eb366510 Zea mays HOM05D005981 ORTHO05D007551 8.0e-09 64.3 53 54.7
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 4.0e-08 62.0 36 75.0
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 4.0e-08 62.0 36 75.0
CBR_g56098 Chara braunii HOM05D005981 ORTHO05D007551 1.3e-06 57.0 46 58.7


User provided reference genes

Program Settings