Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 5.6e-83 310.8 152 100.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.3e-82 309.7 152 99.3
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.8e-82 308.5 152 99.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.1e-81 306.6 152 98.7
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.1e-81 306.6 152 98.7
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.4e-81 306.2 152 98.0
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-81 306.2 152 98.0
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.0e-81 304.7 152 98.0
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.3e-81 304.3 152 98.0
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.3e-81 304.3 152 98.0
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 6.9e-81 303.9 152 97.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 97.4
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.6e-80 302.0 152 96.7
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.4e-80 301.6 152 96.7
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.7
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 6.4e-79 297.4 152 95.4
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.1
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.1
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.7
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 94.1
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 94.1
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 93.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.2e-78 295.0 153 94.8
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 7.1e-78 293.9 149 94.6
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 96.6
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.1e-78 293.9 149 96.0
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 148 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 148 95.9
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 92.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 95.9
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.9
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.6
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.1e-77 292.4 147 95.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 94.1
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 95.3
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 95.3
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 6.0e-77 290.8 149 93.3
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 152 92.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 152 92.1
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 149 94.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 90.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 90.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-76 289.7 149 91.9
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-76 289.7 149 91.9
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.8
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 92.8
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 92.8
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.3e-76 288.9 148 93.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 150 92.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.3e-76 288.9 146 94.5
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.3e-76 288.9 146 94.5
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 90.1
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 89.5
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 150 94.0
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 91.4
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.1e-76 287.7 149 93.3
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 90.1
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 92.7
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 6.7e-76 287.3 150 92.7
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 6.7e-76 287.3 152 91.4
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 89.5
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 90.1
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.9e-75 285.8 155 89.7
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.5e-75 285.4 156 89.1
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.5e-75 285.4 156 89.1
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 93.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 93.2
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.6e-75 284.3 152 91.4
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 90.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 90.8
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.8e-74 282.0 144 93.1
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 151 90.1
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 151 90.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 91.2
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 8.1e-74 280.4 148 91.2
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.1e-73 280.0 148 91.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.1e-73 280.0 148 91.9
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 91.2
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.4e-73 278.9 148 89.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.4e-73 278.9 148 89.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.4e-73 278.9 150 88.7
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 91.2
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.1e-73 278.5 143 93.0
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 4.0e-73 278.1 148 90.5
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 5.3e-73 277.7 148 89.9
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 6.9e-73 277.3 152 88.2
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 4.5e-72 274.6 148 89.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.0e-71 273.5 140 94.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.7e-71 272.7 156 87.2
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.9e-71 271.9 144 90.3
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.8e-71 271.6 143 90.9
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.2e-70 268.1 149 88.6
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.7e-69 265.4 143 89.5
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.5e-67 259.6 135 91.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.9e-67 259.2 146 85.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 94.0
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 94.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.8e-66 255.4 128 95.3
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 6.3e-66 254.2 132 93.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.2e-66 253.8 134 89.6
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 128 94.5
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 91.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.1e-65 251.9 150 82.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.1e-65 251.9 150 82.7
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 89.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 90.2
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.1e-65 251.5 130 90.8
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.3e-65 251.1 141 87.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.5e-64 249.6 130 91.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.5e-64 249.6 131 90.1
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.5e-64 249.6 131 91.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 2.0e-64 249.2 132 88.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.4e-64 248.4 131 90.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 4.5e-64 248.1 131 90.1
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.0e-63 246.9 134 89.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.3e-63 246.5 152 82.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.3e-63 246.5 134 86.6
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 87.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.8e-63 245.0 147 82.3
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.0e-63 244.6 132 89.4
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.2e-61 240.0 144 80.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.7e-61 238.8 151 75.5
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.8e-60 236.1 144 73.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 6.7e-60 234.2 145 73.1
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.1e-57 226.9 157 73.2
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 7.9e-53 210.7 184 61.4
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 3.9e-52 208.4 116 87.1
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.7e-51 204.5 144 72.9
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 8.2e-50 200.7 126 74.6
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.2e-48 196.8 103 93.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 5.9e-48 194.5 103 90.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.7e-47 193.0 103 90.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 5.5e-46 188.0 116 74.1
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.7e-43 177.9 87 95.4
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 4.1e-41 171.8 115 80.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.0e-40 169.5 87 89.7
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 5.5e-38 161.4 79 94.9
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.4e-36 156.8 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.8e-34 148.3 142 58.5
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.3e-33 144.8 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 9.1e-33 144.1 74 90.5
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-27 126.3 71 87.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.5e-27 124.4 71 87.3
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.7e-26 122.1 71 85.9
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.8e-25 119.8 78 75.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 7.8e-16 87.8 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.6e-15 84.7 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 54.1


User provided reference genes

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