Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 9.2e-273 943.0 478 100.0
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 2.2e-258 895.2 477 94.8
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 2.8e-237 825.1 476 88.9
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 4.1e-220 768.1 476 82.6
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 8.7e-215 750.4 474 80.4
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 2.0e-211 739.2 473 80.1
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 1.3e-194 683.3 476 73.7
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 2.9e-194 682.2 482 73.2
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 1.8e-191 672.9 479 73.3
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 2.3e-191 672.5 472 71.8
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 5.7e-190 667.9 461 72.7
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 7.5e-190 667.5 479 73.1
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.8e-189 665.6 460 73.5
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 8.2e-189 664.1 475 70.5
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 1.4e-188 663.3 458 73.8
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 9.1e-188 660.6 472 70.8
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 9.1e-188 660.6 470 72.3
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 2.0e-187 659.4 457 72.4
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 2.6e-187 659.1 473 70.2
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.0e-186 657.1 471 70.3
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 1.3e-186 656.8 450 74.4
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.2e-186 656.0 453 72.2
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 2.9e-186 655.6 467 71.9
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 2.9e-186 655.6 453 72.4
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.5e-185 653.3 471 70.1
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 7.2e-185 651.0 453 71.7
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 3.6e-184 648.7 470 69.6
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 4.7e-184 648.3 459 71.0
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 1.8e-183 646.4 433 74.4
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 1.8e-183 646.4 457 70.5
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 2.3e-183 646.0 467 70.0
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.3e-183 646.0 448 71.9
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.3e-183 646.0 448 71.9
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 5.2e-183 644.8 463 69.3
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 8.8e-183 644.0 471 70.5
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.0e-182 642.9 478 69.9
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 5.7e-182 641.3 429 74.4
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 5.7e-182 641.3 446 72.4
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 9.8e-182 640.6 477 69.8
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 2.8e-181 639.0 455 70.5
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 9.1e-180 634.0 481 68.0
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 9.1e-180 634.0 476 66.8
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 1.6e-179 633.3 439 72.4
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 3.5e-179 632.1 425 73.6
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 3.5e-179 632.1 441 70.5
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 5.9e-179 631.3 441 70.1
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 3.8e-178 628.6 483 67.5
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 3.8e-178 628.6 484 66.9
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 5.0e-178 628.2 449 69.5
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 6.5e-178 627.9 493 65.9
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 1.1e-177 627.1 471 66.2
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 5.5e-177 624.8 426 72.3
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 3.6e-176 622.1 426 72.3
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 3.6e-176 622.1 473 66.2
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 3.6e-176 622.1 474 66.0
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 6.1e-176 621.3 431 71.7
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 5.2e-175 618.2 470 67.2
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 6.8e-175 617.8 445 68.5
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 3.4e-174 615.5 435 72.2
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 5.7e-174 614.8 474 67.3
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 7.5e-174 614.4 449 69.3
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 2.8e-173 612.5 456 68.2
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 3.7e-173 612.1 470 67.4
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 3.7e-173 612.1 470 67.9
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 2.4e-172 609.4 470 67.2
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 3.1e-172 609.0 450 69.3
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 3.1e-172 609.0 472 66.5
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 9.1e-172 607.4 470 67.2
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 1.6e-171 606.7 474 65.8
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 3.5e-171 605.5 470 66.8
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 2.9e-170 602.4 398 78.1
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 1.1e-169 600.5 473 65.1
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 4.3e-169 598.6 474 64.6
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 4.0e-167 592.0 451 66.7
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 8.9e-167 590.9 473 63.6
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 2.0e-166 589.7 450 66.9
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.8e-164 583.2 466 64.8
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 9.2e-164 580.9 432 67.6
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 9.2e-164 580.9 460 65.7
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 1.9e-161 573.2 403 69.7
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 1.2e-160 570.5 475 64.8
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 2.6e-158 562.8 439 65.1
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 9.8e-158 560.8 470 63.4
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 4.7e-152 542.0 460 60.9
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 3.1e-151 539.3 439 61.7
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 4.7e-144 515.4 434 60.1
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 1.5e-142 510.4 426 61.0
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 2.4e-140 503.1 447 58.6
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 7.1e-132 474.9 426 57.5
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 6.9e-127 458.4 469 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 3.9e-122 442.6 429 53.1
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 6.9e-119 431.8 403 56.3
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 3.5e-115 419.5 325 70.2
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 3.3e-113 412.9 427 52.5
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 6.3e-104 382.1 435 47.4
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 3.1e-103 379.8 263 69.2
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 2.0e-102 377.1 418 48.1
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 1.7e-101 374.0 452 45.6
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 3.2e-92 343.2 476 43.5
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 5.3e-87 325.9 321 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 2.9e-69 266.9 220 58.6
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 1.1e-68 265.0 194 69.6
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 7.0e-55 219.2 143 71.3
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 5.6e-52 209.5 147 64.6
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.3e-37 161.8 117 66.7
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 1.2e-27 128.6 133 51.9
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.9e-23 114.8 86 62.8
GSVIVG01016650001 Vitis vinifera HOM05D002360 ORTHO05D006971 5.1e-13 80.1 487 22.4
Lj9A539T91 Lonicera japonica HOM05D002360 ORTHO05D006971 1.5e-12 78.6 485 22.7
PSO135G0985 Papaver somniferum HOM05D002360 ORTHO05D006971 9.6e-12 75.9 470 21.9
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 1.6e-11 75.1 485 21.6
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 2.1e-11 74.7 488 22.1
Aqoxy7G00909 Aquilegia oxysepala HOM05D002360 ORTHO05D006971 4.8e-11 73.6 462 21.9
SalBow6G3918 Salvia bowleyana HOM05D002360 ORTHO05D006971 4.8e-11 73.6 493 23.1
Lalb_Chr11g0075841 Lupinus albus HOM05D002360 ORTHO05D006971 1.1e-10 72.4 487 21.1
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.8e-10 71.6 483 20.5
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 1.8e-10 71.6 486 21.6
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.8e-10 71.6 488 20.9
Cc04_g00540 Coffea canephora HOM05D002360 ORTHO05D006971 2.4e-10 71.2 503 21.9
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 2.4e-10 71.2 487 21.6
Potri.014G148700 Populus trichocarpa HOM05D002360 ORTHO05D006971 2.4e-10 71.2 491 21.8
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 2.4e-10 71.2 486 21.4
Zm00001eb006300 Zea mays HOM05D002360 ORTHO05D006971 3.1e-10 70.9 500 22.4
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 5.3e-10 70.1 487 21.8
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 5.3e-10 70.1 488 21.5
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 5.3e-10 70.1 511 22.1
ATR0006G040 Amborella trichopoda HOM05D002360 ORTHO05D006971 6.9e-10 69.7 486 22.2
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 6.9e-10 69.7 488 20.7
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 6.9e-10 69.7 488 20.7
TWI38G1596 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 6.9e-10 69.7 487 22.0
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 9.0e-10 69.3 491 21.4
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 9.0e-10 69.3 488 21.5
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 9.0e-10 69.3 491 21.2
Migut.I01145 Erythranthe guttata HOM05D002360 ORTHO05D006971 1.2e-09 68.9 494 21.9
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 1.2e-09 68.9 492 22.0
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 1.2e-09 68.9 488 20.5
FvH4_4g12690 Fragaria vesca HOM05D002360 ORTHO05D006971 1.5e-09 68.6 488 21.5
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 2.0e-09 68.2 491 21.0
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 2.0e-09 68.2 488 21.3
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 2.6e-09 67.8 491 21.4
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 2.6e-09 67.8 491 21.4
Sopen03g041530 Solanum pennellii HOM05D002360 ORTHO05D006971 2.6e-09 67.8 492 21.1
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 3.4e-09 67.4 491 21.2
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 4.5e-09 67.0 487 20.9
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 4.5e-09 67.0 491 20.8
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 9.9e-09 65.9 500 21.8
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.3e-08 65.5 61 60.7
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 1.3e-08 65.5 522 22.4
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 1.7e-08 65.1 483 20.1
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 1.7e-08 65.1 497 21.7
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 1.7e-08 65.1 500 21.8
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 2.2e-08 64.7 484 21.1
CiPaw.01G111500 Carya illinoinensis HOM05D002360 ORTHO05D006971 2.2e-08 64.7 486 20.4
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 6.4e-08 63.2 499 20.8
Pp3c21_12310 Physcomitrium patens HOM05D002360 ORTHO05D006971 6.4e-08 63.2 481 22.0
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 8.4e-08 62.8 500 21.0
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 8.4e-08 62.8 500 21.0
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 1.1e-07 62.4 485 20.0
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 4.2e-07 60.5 497 21.1
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 4.2e-07 60.5 465 21.5
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 7.1e-07 59.7 191 24.6


User provided reference genes

Program Settings