Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 9.1e-121 437.2 266 100.0
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 4.7e-24 115.9 134 51.5
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 4.7e-24 115.9 134 51.5
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.0e-23 114.8 134 50.7
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.0e-23 114.8 134 50.7
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.0e-23 114.8 134 50.7
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 6.7e-23 112.1 134 48.5
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.3e-22 109.8 134 47.8
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 2.2e-21 107.1 134 47.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 6.3e-21 105.5 133 46.6
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 4.1e-20 102.8 138 44.9
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 4.1e-20 102.8 138 44.9
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 4.1e-20 102.8 138 44.9
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.7e-18 97.4 131 48.1
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.2e-18 97.1 128 48.4
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.1e-17 94.7 150 42.7
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.4e-17 94.4 129 45.0
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.9e-17 94.0 170 39.4
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.5e-17 93.6 136 44.9
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.5e-17 92.4 162 41.4
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.2e-17 92.0 129 44.2
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-16 90.5 135 44.4
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 6.1e-16 89.0 64 70.3
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 1.0e-15 88.2 131 41.2
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 3.0e-15 86.7 64 70.3
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.9e-15 86.3 64 68.8
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 3.9e-15 86.3 64 68.8
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 3.9e-15 86.3 64 68.8
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.7e-15 85.5 64 68.8
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.8e-15 85.1 132 42.4
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-14 84.7 160 38.8
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-14 84.7 165 37.6
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 2.0e-14 84.0 128 40.6
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.3e-14 83.2 135 43.7
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.4e-14 82.8 122 43.4
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.8e-13 79.3 62 61.3
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.1e-12 78.2 63 63.5
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 4.1e-12 76.3 64 59.4
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 4.1e-12 76.3 64 57.8
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 4.1e-12 76.3 63 58.7
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 7.0e-12 75.5 64 56.2
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 9.1e-12 75.1 62 56.5
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 9.1e-12 75.1 63 57.1
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.2e-11 74.7 62 59.7
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.2e-11 74.7 64 59.4
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.6e-11 74.3 154 37.7
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 1.6e-11 74.3 123 41.5
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.6e-11 74.3 84 47.6
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.6e-11 74.3 64 54.7
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 2.0e-11 73.9 123 41.5
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 2.0e-11 73.9 63 58.7
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 2.0e-11 73.9 63 60.3
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 4.5e-11 72.8 160 35.6
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.9e-11 72.4 138 39.1
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 5.9e-11 72.4 62 59.7
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 7.7e-11 72.0 135 35.6
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 7.7e-11 72.0 62 54.8
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.3e-10 71.2 93 43.0
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.3e-10 71.2 64 54.7
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.3e-10 71.2 94 44.7
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.7e-10 70.9 62 56.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 1.7e-10 70.9 62 56.5
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 1.7e-10 70.9 64 53.1
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.7e-10 70.9 64 53.1
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 2.2e-10 70.5 62 58.1
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 2.2e-10 70.5 62 58.1
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 2.2e-10 70.5 62 54.8
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 2.2e-10 70.5 62 58.1
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 2.2e-10 70.5 64 50.0
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 2.9e-10 70.1 64 51.6
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 2.9e-10 70.1 62 54.8
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 2.9e-10 70.1 64 53.1
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.9e-10 70.1 62 54.8
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 3.8e-10 69.7 68 54.4
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 3.8e-10 69.7 63 50.8
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 3.8e-10 69.7 109 43.1
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 5.0e-10 69.3 56 60.7
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.5e-10 68.9 135 36.3
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.5e-10 68.9 62 54.8
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 6.5e-10 68.9 64 53.1
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 8.5e-10 68.6 65 53.8
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 8.5e-10 68.6 65 53.8
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 8.5e-10 68.6 65 53.8
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 1.5e-09 67.8 68 54.4
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 1.5e-09 67.8 140 35.0
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 1.5e-09 67.8 62 53.2
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.5e-09 67.8 62 54.8
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.5e-09 67.8 62 54.8
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.5e-09 67.8 138 37.7
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.5e-09 67.8 62 53.2
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.5e-09 67.8 62 54.8
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 1.9e-09 67.4 65 55.4
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.9e-09 67.4 68 54.4
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 3.2e-09 66.6 139 35.3
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 3.2e-09 66.6 139 35.3
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 3.2e-09 66.6 140 35.7
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 3.2e-09 66.6 65 50.8
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.2e-09 66.6 62 53.2
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 5.5e-09 65.9 138 33.3
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 5.5e-09 65.9 138 34.8
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 5.5e-09 65.9 62 51.6
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.2e-09 65.5 134 38.1
Carub.0006s3319 Capsella rubella HOM05D003286 ORTHO05D002463 7.2e-09 65.5 146 36.3
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 9.4e-09 65.1 68 48.5
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 9.4e-09 65.1 64 51.6
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 9.4e-09 65.1 65 50.8
CARHR252270 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.2e-08 64.7 59 55.9
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.6e-08 64.3 73 45.2
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 1.6e-08 64.3 62 50.0
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 2.1e-08 63.9 68 50.0
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 2.1e-08 63.9 57 56.1
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.7e-08 63.5 189 32.3
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 2.7e-08 63.5 68 48.5
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.7e-08 63.5 64 46.9
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.6e-08 63.2 53 56.6
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 4.7e-08 62.8 62 48.4
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.0e-07 61.6 79 45.6
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.0e-07 61.6 56 55.4
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.4e-07 61.2 64 51.6
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.4e-07 61.2 53 56.6
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 1.8e-07 60.8 64 46.9
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.8e-07 60.8 56 55.4
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.3e-07 60.5 53 58.5
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 2.3e-07 60.5 68 48.5
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 4.0e-07 59.7 149 33.6
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 5.2e-07 59.3 55 52.7
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 5.2e-07 59.3 55 50.9
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 6.7e-07 58.9 102 41.2
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 8.8e-07 58.5 140 37.1
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.2e-06 58.2 55 52.7
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.2e-06 58.2 72 47.2
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 1.5e-06 57.8 53 52.8
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 2.0e-06 57.4 64 48.4
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 2.6e-06 57.0 54 53.7
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 3.3e-06 56.6 75 44.0
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 4.4e-06 56.2 62 50.0
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 5.7e-06 55.8 68 42.6
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.5e-06 55.5 69 43.5
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 7.5e-06 55.5 63 47.6
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 7.5e-06 55.5 64 43.8
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 7.5e-06 55.5 64 43.8
Medtr1g105515 Medicago truncatula HOM05D003286 ORTHO05D002463 9.7e-06 55.1 68 47.1
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 9.7e-06 55.1 54 50.0


User provided reference genes

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