Gene: AT4G02970
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G02970
- Transcript Identifier AT4G02970.1
- Gene Type Coding gene
- Location Chr4 : 1317499-1319179 : positive
Gene Family Information
- ID HOM05D003286
- #Genes/#Species 208/79
- Phylogenetic origin
- ID ORTHO05D002463
- #Genes/#Species 286/85
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT4G02970.1
- symbol AT7SL-1
- uniprot Q9ZT95
Descriptions
- Description 7SL RNA1
- Computational description 7SL RNA1 (AT7SL-1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03350.1); Has 8670 Blast hits to 3996 proteins in 634 species: Archae - 0; Bacteria - 6; Metazoa - 3720; Fungi - 1035; Plants - 2265; Viruses - 166; Other Eukaryotes - 1478 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043161 | IBA | Gene Ontology | proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | AT4G03350 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G03350 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043130 | IBA | Gene Ontology | ubiquitin binding | 1 |
| GO:0031593 | IBA | Gene Ontology | polyubiquitin modification-dependent protein binding | 1 |
| GO:0070628 | IBA | Gene Ontology | proteasome binding | 1 |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005786 | ISS | Gene Ontology | signal recognition particle, endoplasmic reticulum targeting | |
| GO:0005829 | IBA | Gene Ontology | cytosol | 1 |
| GO:0005654 | IBA | Gene Ontology | nucleoplasm | 1 |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |