Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 1.5e-202 709.5 411 100.0
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 6.0e-47 192.6 413 38.5
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.3e-41 174.9 428 39.5
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 1.5e-37 161.4 456 37.1
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 2.2e-36 157.5 461 38.4
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 6.5e-33 146.0 381 34.6
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 8.5e-33 145.6 491 31.6
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 7.9e-31 139.0 509 34.4
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 1.7e-28 131.3 406 32.3
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.3e-28 129.4 397 30.5
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 4.1e-27 126.7 394 31.5
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 6.9e-27 125.9 393 32.8
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 2.0e-26 124.4 416 40.1
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.4e-26 123.6 421 30.6
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 1.3e-25 121.7 408 40.2
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.8e-25 120.2 407 29.7
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 3.8e-25 120.2 399 32.6
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 3.8e-25 120.2 398 32.7
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 5.0e-25 119.8 393 29.8
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 9.4e-24 115.5 393 31.3
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 1.2e-23 115.2 476 29.8
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 4.7e-23 113.2 555 26.8
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 4.7e-23 113.2 395 30.6
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 4.7e-23 113.2 555 26.8
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 7.9e-23 112.5 474 32.3
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.4e-22 111.7 426 29.1
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 2.6e-21 107.5 392 28.8
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 1.7e-20 104.8 460 31.5
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.7e-20 104.8 395 28.9
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 3.7e-20 103.6 460 31.3
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 6.3e-20 102.8 460 31.1
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 6.3e-20 102.8 395 26.8
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 8.2e-20 102.4 142 48.6
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 8.2e-20 102.4 142 48.6
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.4e-19 101.7 141 48.2
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.4e-19 101.7 141 48.2
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.4e-19 101.7 141 48.2
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 1.4e-19 101.7 406 29.8
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 2.4e-19 100.9 143 46.9
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 4.1e-19 100.1 145 46.2
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 5.3e-19 99.8 141 46.8
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 7.0e-19 99.4 161 43.5
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.0e-17 95.5 145 44.1
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.0e-17 95.5 145 44.1
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.0e-17 95.5 145 44.1
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.8e-17 93.6 145 44.1
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 3.8e-17 93.6 381 28.9
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 8.5e-17 92.4 397 26.4
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.1e-16 92.0 160 41.2
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-16 92.0 139 43.9
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 4.2e-16 90.1 396 26.3
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.5e-16 89.7 401 26.7
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 5.5e-16 89.7 398 25.9
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.2e-15 88.6 87 55.2
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.2e-15 88.6 398 26.1
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 1.2e-15 88.6 395 28.1
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 1.6e-15 88.2 404 26.0
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.1e-15 87.8 395 26.1
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 3.6e-15 87.0 109 46.8
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.7e-15 86.7 420 30.5
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.7e-15 86.7 397 25.4
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 4.7e-15 86.7 140 44.3
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 6.1e-15 86.3 108 43.5
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 6.1e-15 86.3 397 25.9
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 8.0e-15 85.9 70 60.0
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.0e-14 85.5 396 24.7
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 1.4e-14 85.1 404 24.5
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.4e-14 85.1 163 40.5
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.8e-14 84.7 396 25.8
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.2e-14 83.2 397 25.4
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 5.2e-14 83.2 399 26.6
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 5.2e-14 83.2 396 24.5
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 6.7e-14 82.8 405 26.2
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 6.7e-14 82.8 109 42.2
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 6.7e-14 82.8 109 42.2
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 6.7e-14 82.8 398 27.1
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 6.7e-14 82.8 396 24.7
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 6.7e-14 82.8 395 24.8
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 8.8e-14 82.4 87 49.4
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 8.8e-14 82.4 70 58.6
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.1e-13 82.0 395 26.1
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.5e-13 81.6 70 57.1
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.5e-13 81.6 401 24.9
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 2.0e-13 81.3 415 31.8
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.0e-13 81.3 406 26.1
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 2.6e-13 80.9 108 41.7
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.6e-13 80.9 104 45.2
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 2.6e-13 80.9 408 24.3
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 2.6e-13 80.9 400 25.2
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 3.3e-13 80.5 86 50.0
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 3.3e-13 80.5 404 25.2
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 3.3e-13 80.5 70 58.6
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.3e-13 80.5 395 25.1
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 3.3e-13 80.5 384 26.0
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 4.4e-13 80.1 395 23.3
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 4.4e-13 80.1 88 48.9
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 4.4e-13 80.1 396 24.0
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 5.7e-13 79.7 87 49.4
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 5.7e-13 79.7 93 47.3
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 5.7e-13 79.7 115 46.1
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 5.7e-13 79.7 86 45.3
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 7.5e-13 79.3 93 45.2
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 7.5e-13 79.3 93 45.2
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 7.5e-13 79.3 396 24.7
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 9.7e-13 79.0 87 46.0
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.3e-12 78.6 70 55.7
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.7e-12 78.2 389 26.5
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.7e-12 78.2 129 39.5
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.7e-12 78.2 398 23.9
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.2e-12 77.8 86 47.7
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.2e-12 77.8 86 47.7
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 2.2e-12 77.8 69 55.1
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 2.8e-12 77.4 395 26.6
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.8e-12 77.4 398 24.9
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 4.8e-12 76.6 428 24.5
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 4.8e-12 76.6 70 54.3
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.8e-12 76.6 400 25.0
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 4.8e-12 76.6 86 46.5
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 4.8e-12 76.6 70 55.7
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.3e-12 76.3 94 50.0
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 6.3e-12 76.3 400 25.0
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 6.3e-12 76.3 397 24.9
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 8.2e-12 75.9 106 47.2
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-11 75.5 406 27.3
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.4e-11 75.1 390 25.4
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 1.4e-11 75.1 92 50.0
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.8e-11 74.7 394 26.6
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.8e-11 74.7 385 26.2
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.8e-11 74.7 87 47.1
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 2.4e-11 74.3 403 23.6
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.4e-11 74.3 87 47.1
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.1e-11 73.9 402 25.1
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 4.1e-11 73.6 404 23.0
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 1.6e-10 71.6 407 23.1
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.6e-10 71.6 71 53.5
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.6e-10 71.6 399 25.3
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 1.6e-10 71.6 69 55.1
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 2.0e-10 71.2 395 23.8
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 2.0e-10 71.2 71 54.9
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 3.5e-10 70.5 395 24.1
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.7e-10 69.3 96 45.8
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 7.7e-10 69.3 102 38.2
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 7.7e-10 69.3 70 47.1
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 7.7e-10 69.3 70 48.6
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 7.7e-10 69.3 70 48.6
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.0e-09 68.9 404 24.3
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.0e-09 68.9 70 54.3
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.3e-09 68.6 103 37.9
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.3e-09 68.6 103 37.9
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.3e-09 68.6 71 49.3
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.7e-09 68.2 91 41.8
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.9e-09 67.4 105 39.0
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 2.9e-09 67.4 65 53.8
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.8e-09 67.0 65 55.4
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 5.0e-09 66.6 70 47.1
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 5.0e-09 66.6 82 45.1
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 6.5e-09 66.2 134 35.8
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 8.5e-09 65.9 409 24.4
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 8.5e-09 65.9 91 40.7
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 8.5e-09 65.9 90 40.0
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 8.5e-09 65.9 70 44.3
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 1.1e-08 65.5 109 35.8
BcaC03g16191 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-08 65.5 70 47.1
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 1.5e-08 65.1 70 50.0
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.9e-08 64.7 85 45.9
CARHR252270 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.5e-08 64.3 54 57.4
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.5e-08 64.3 70 42.9
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 2.5e-08 64.3 85 44.7
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 3.2e-08 63.9 85 44.7
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.2e-08 63.5 70 47.1
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.2e-08 63.5 72 40.3
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.2e-08 63.5 72 40.3
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.2e-08 63.5 72 40.3
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.2e-08 63.5 72 40.3
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.2e-08 62.8 391 23.3
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 9.4e-08 62.4 416 25.0
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 9.4e-08 62.4 69 49.3
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.2e-07 62.0 79 44.3
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 1.2e-07 62.0 72 40.3
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.6e-07 61.6 72 38.9
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 2.7e-07 60.8 141 34.8
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 2.7e-07 60.8 401 22.9
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.6e-07 60.5 86 46.5
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 4.7e-07 60.1 91 41.8
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 8.0e-07 59.3 105 34.3
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 8.0e-07 59.3 85 41.2
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 1.0e-06 58.9 94 34.0
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.4e-06 58.5 90 45.6
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.8e-06 58.2 365 24.9
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 4.0e-06 57.0 70 42.9
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 5.2e-06 56.6 98 34.7


User provided reference genes

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