Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 6.9e-103 377.9 280 100.0
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 7.0e-47 191.8 280 44.6
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 5.0e-45 185.7 280 44.6
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.9e-44 183.7 280 44.3
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.6e-43 180.6 285 43.5
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.6e-43 180.6 285 43.5
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 3.9e-37 159.5 180 52.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 4.7e-35 152.5 282 48.9
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 8.1e-35 151.8 187 49.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 2.3e-34 150.2 177 48.6
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.2e-30 137.9 169 47.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 7.1e-23 112.1 74 60.8
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.1e-22 110.5 65 66.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.1e-22 110.5 65 67.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.1e-22 110.5 65 67.7
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.6e-22 109.4 65 69.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.6e-22 109.4 65 69.2
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.6e-22 109.4 65 66.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.6e-22 109.4 66 66.7
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 4.6e-22 109.4 70 61.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 6.0e-22 109.0 70 62.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 6.0e-22 109.0 64 67.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 7.8e-22 108.6 74 59.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.0e-21 108.2 66 65.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-21 108.2 65 69.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-21 107.8 70 62.9
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.3e-21 107.8 68 63.2
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.3e-21 107.8 64 68.8
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.3e-21 107.8 64 67.2
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.3e-21 107.8 63 69.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.7e-21 107.5 65 63.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.7e-21 107.5 71 62.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.3e-21 107.1 72 61.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.3e-21 107.1 72 61.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 2.3e-21 107.1 64 67.2
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.0e-21 106.7 69 65.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 3.0e-21 106.7 70 61.4
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.0e-21 106.7 70 61.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 3.0e-21 106.7 65 66.2
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.0e-21 106.7 64 65.6
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.9e-21 106.3 66 63.6
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.9e-21 106.3 71 60.6
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.1e-21 105.9 64 67.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.1e-21 105.9 67 65.7
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.6e-21 105.5 71 57.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.6e-21 105.5 65 63.1
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 6.6e-21 105.5 64 65.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 6.6e-21 105.5 70 60.0
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.6e-21 105.1 65 61.5
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 8.6e-21 105.1 63 65.1
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 8.6e-21 105.1 62 67.7
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.6e-21 105.1 62 67.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.6e-21 105.1 62 67.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 8.6e-21 105.1 62 67.7
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 8.6e-21 105.1 68 61.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.1e-20 104.8 71 60.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.1e-20 104.8 71 60.6
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.1e-20 104.8 71 60.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.1e-20 104.8 67 62.7
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-20 104.4 69 65.2
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-20 104.4 69 65.2
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-20 104.4 64 64.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.5e-20 104.4 66 62.1
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.5e-20 104.4 62 66.1
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.9e-20 104.0 67 62.7
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.9e-20 104.0 63 65.1
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-20 104.0 63 65.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-20 104.0 63 65.1
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.5e-20 103.6 66 62.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.5e-20 103.6 64 65.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.3e-20 103.2 63 65.1
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.3e-20 103.2 66 60.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.3e-20 103.2 62 66.1
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.3e-20 103.2 62 66.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.3e-20 103.2 63 66.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 3.3e-20 103.2 63 66.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.3e-20 103.2 64 64.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.3e-20 103.2 65 64.6
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.3e-20 102.8 65 66.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 4.3e-20 102.8 62 64.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.6e-20 102.4 67 62.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 5.6e-20 102.4 66 59.1
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.6e-20 102.4 66 62.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 7.3e-20 102.1 66 62.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.3e-20 102.1 63 63.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.3e-20 102.1 63 63.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.6e-20 101.7 66 63.6
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 9.6e-20 101.7 70 58.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 9.6e-20 101.7 63 63.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 9.6e-20 101.7 62 66.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 9.6e-20 101.7 64 64.1
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 9.6e-20 101.7 65 63.1
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 9.6e-20 101.7 62 62.9
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.6e-20 101.7 62 62.9
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 9.6e-20 101.7 64 60.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-19 101.3 62 64.5
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.2e-19 101.3 61 67.2
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.6e-19 100.9 65 60.0
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.6e-19 100.9 66 59.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.6e-19 100.9 70 55.7
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.6e-19 100.9 68 61.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.1e-19 100.5 66 59.1
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.1e-19 100.5 66 60.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.1e-19 100.5 65 64.6
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.8e-19 100.1 70 55.7
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.6e-19 99.8 62 62.9
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.6e-19 99.8 62 62.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 3.6e-19 99.8 63 63.5
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 4.7e-19 99.4 63 60.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 4.7e-19 99.4 61 62.3
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 4.7e-19 99.4 66 62.1
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.2e-19 99.0 63 60.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 6.2e-19 99.0 64 60.9
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-18 98.2 53 71.7
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.1e-18 98.2 72 55.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.1e-18 98.2 62 62.9
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.8e-18 97.4 64 60.9
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 6.8e-18 95.5 71 57.7
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 5.8e-17 92.4 68 55.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.8e-17 92.4 66 59.1
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.6e-17 92.0 55 65.5
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.9e-17 91.7 73 56.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.3e-16 91.3 94 45.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.7e-16 90.9 74 52.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.9e-16 90.1 91 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.5e-14 83.2 50 66.0
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 3.0e-13 80.1 70 48.6
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.0e-13 80.1 70 48.6
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.9e-13 79.7 68 50.0
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 6.6e-13 79.0 44 68.2
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.6e-13 79.0 72 50.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 8.7e-13 78.6 64 48.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.9e-12 77.4 65 49.2
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.3e-12 76.3 69 47.8
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 4.3e-12 76.3 47 59.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.1e-11 73.9 53 56.6
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.8e-11 73.6 67 50.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 3.6e-11 73.2 57 50.9
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 5.3e-10 69.3 70 45.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 6.9e-10 68.9 35 74.3
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.6e-09 67.0 35 71.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.8e-09 65.9 38 65.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.8e-09 65.9 35 71.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 5.8e-09 65.9 35 71.4
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.7e-08 64.3 35 68.6
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.2e-08 63.9 35 65.7
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.9e-08 63.5 32 75.0
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.9e-08 63.5 32 75.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.4e-08 62.4 32 71.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 5.4e-07 59.3 32 68.8
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.4e-07 59.3 32 68.8
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-06 57.0 35 65.7


User provided reference genes

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