Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.8e-51 205.7 106 100.0
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.3e-25 119.8 64 92.2
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.9e-24 115.9 64 85.9
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 4.1e-24 114.8 64 84.4
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.7e-23 112.1 64 84.4
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 3.5e-23 111.7 64 81.2
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 82.8
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 84.4
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 84.4
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 84.4
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 84.4
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 6.0e-23 110.9 64 84.4
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.7e-22 109.4 64 82.8
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 1.2e-20 103.2 66 78.8
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 2.1e-20 102.4 66 75.8
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.1e-20 102.4 66 75.8
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 2.8e-20 102.1 71 71.8
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 3.6e-20 101.7 66 75.8
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 4.7e-20 101.3 66 78.8
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 8.1e-20 100.5 68 72.1
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 8.1e-20 100.5 68 72.1
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.1e-19 100.1 68 70.6
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.4e-19 99.8 66 74.2
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.4e-19 99.8 66 74.2
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 1.8e-19 99.4 66 74.2
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.8e-19 99.4 66 74.2
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.8e-19 99.4 66 75.8
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 1.8e-19 99.4 66 74.2
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 2.3e-19 99.0 66 74.2
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 3.1e-19 98.6 66 72.7
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.1e-19 98.6 66 74.2
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 3.1e-19 98.6 66 74.2
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.2e-19 97.8 68 69.1
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 5.2e-19 97.8 68 70.6
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 5.2e-19 97.8 66 72.7
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 6.8e-19 97.4 66 71.2
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 6.8e-19 97.4 66 74.2
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 6.8e-19 97.4 66 71.2
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 6.8e-19 97.4 68 69.1
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 8.9e-19 97.1 66 72.7
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 1.2e-18 96.7 66 71.2
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 1.2e-18 96.7 66 71.2
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.2e-18 96.7 66 69.7
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 1.5e-18 96.3 66 71.2
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.5e-18 96.3 66 69.7
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 2.0e-18 95.9 66 69.7
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.0e-18 95.9 66 72.7
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 2.6e-18 95.5 66 68.2
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 2.6e-18 95.5 68 66.2
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 2.6e-18 95.5 66 71.2
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.6e-18 95.5 66 69.7
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 2.6e-18 95.5 66 71.2
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 3.4e-18 95.1 66 71.2
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 3.4e-18 95.1 66 71.2
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 3.4e-18 95.1 66 69.7
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 3.4e-18 95.1 66 69.7
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 68.2
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 71.2
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 68.2
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 69.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 69.7
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 4.4e-18 94.7 66 71.2
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 5.8e-18 94.4 66 69.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.5e-18 94.0 72 68.1
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.5e-18 94.0 73 67.1
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 9.8e-18 93.6 66 65.2
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 9.8e-18 93.6 68 67.6
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 9.8e-18 93.6 66 68.2
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 9.8e-18 93.6 66 69.7
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 1.3e-17 93.2 66 72.7
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 1.3e-17 93.2 66 68.2
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 1.7e-17 92.8 66 66.7
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 1.7e-17 92.8 66 68.2
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.2e-17 92.4 66 68.2
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 2.9e-17 92.0 66 68.2
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 2.9e-17 92.0 66 68.2
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.9e-17 92.0 66 68.2
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 2.9e-17 92.0 66 68.2
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 3.7e-17 91.7 68 64.7
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 6.4e-17 90.9 66 66.7
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 6.4e-17 90.9 66 66.7
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 6.4e-17 90.9 66 65.2
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 6.4e-17 90.9 81 54.3
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 6.4e-17 90.9 66 66.7
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 2.4e-16 89.0 66 65.2
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 2.4e-16 89.0 66 65.2
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 3.2e-16 88.6 66 63.6
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 4.1e-16 88.2 64 71.9
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 4.1e-16 88.2 81 53.1
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 5.4e-16 87.8 66 66.7
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 7.1e-16 87.4 56 69.6
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 2.1e-15 85.9 68 61.8
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.0e-14 83.6 70 58.6
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.3e-14 83.2 66 63.6
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.3e-14 83.2 66 65.2
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.3e-14 83.2 66 65.2
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 3.9e-14 81.6 70 57.1
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.9e-14 81.6 70 57.1
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.6e-14 80.9 70 57.1
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 6.2e-12 74.3 66 53.0
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 2.3e-11 72.4 53 64.2
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 2.6e-10 68.9 66 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 2.2e-09 65.9 66 53.0
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.8e-09 65.1 68 47.1
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.4e-08 62.4 66 48.5
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.4e-08 62.4 44 72.7
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.2e-07 60.1 66 39.4
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.2e-07 60.1 68 47.1
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.7e-07 58.9 66 48.5
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.7e-06 56.2 59 45.8


User provided reference genes

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