Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.0e-151 540.0 271 100.0
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-50 203.4 268 46.6
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 6.6e-50 201.8 268 46.3
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-49 199.9 299 45.5
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-49 199.5 299 45.2
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 3.3e-49 199.5 300 45.0
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-48 197.6 268 45.5
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.3e-47 193.4 302 43.4
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 5.2e-47 192.2 267 48.7
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.0e-46 190.3 284 44.4
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-46 189.9 261 46.4
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-46 189.9 261 46.4
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-45 187.6 305 41.6
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-45 186.8 266 48.1
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 2.2e-45 186.8 266 48.1
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 3.7e-45 186.0 263 44.9
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-44 183.0 301 43.2
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 4.1e-44 182.6 301 42.9
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 4.1e-44 182.6 301 42.9
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 4.1e-44 182.6 301 42.9
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 9.2e-44 181.4 301 43.2
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 9.2e-44 181.4 301 43.2
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.6e-43 179.1 293 43.3
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-42 176.4 228 48.2
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 3.0e-42 176.4 228 48.2
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 3.9e-42 176.0 266 45.1
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 3.9e-42 176.0 266 45.1
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 3.9e-42 176.0 266 45.1
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.0e-42 175.6 296 43.9
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.3e-41 172.6 293 42.3
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-40 170.2 280 41.8
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-38 164.5 280 41.1
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 2.0e-38 163.7 217 48.4
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-36 157.5 261 42.9
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 3.2e-36 156.4 266 39.5
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 1.1e-33 147.9 199 46.2
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.1e-33 147.9 271 38.7
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 2.8e-32 143.3 259 39.4
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.8e-31 138.7 267 37.5
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.2e-30 137.9 223 41.3
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-29 133.7 211 44.1
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-28 131.3 197 46.2
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 3.2e-28 129.8 268 35.4
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 2.7e-27 126.7 184 45.1
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.0e-27 125.6 262 38.2
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.0e-27 125.6 186 43.0
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-26 124.8 266 38.0
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.1e-26 122.5 191 45.0
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-25 120.9 256 35.2
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 2.5e-25 120.2 264 35.6
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.2e-24 117.9 180 41.1
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 2.4e-23 113.6 172 44.8
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-21 107.8 208 39.4
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.4e-20 103.6 262 30.9
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-20 102.1 144 44.4
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.1e-18 95.9 272 30.5
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 6.6e-18 95.5 183 33.9
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 8.7e-18 95.1 250 30.8
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.7e-18 95.1 283 27.9
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-17 94.0 259 30.9
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-17 94.0 259 30.9
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.9e-17 94.0 282 29.8
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-17 93.6 250 30.4
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.3e-17 93.2 278 28.1
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.3e-17 92.8 166 41.6
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-17 92.8 261 30.7
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 4.3e-17 92.8 261 30.7
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 5.6e-17 92.4 263 34.6
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.6e-17 91.7 168 35.7
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-16 91.3 265 27.9
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-16 90.9 257 29.2
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-16 90.5 258 29.5
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.8e-16 90.1 267 28.8
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 3.6e-16 89.7 259 28.6
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 3.6e-16 89.7 276 28.3
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.2e-16 89.0 160 40.0
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.2e-16 89.0 280 30.0
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 8.1e-16 88.6 261 30.3
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-16 88.6 261 30.3
C07p52690 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-15 88.2 117 47.0
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-15 87.4 261 29.9
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-15 87.4 277 28.9
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.8e-15 87.4 218 33.0
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-15 86.7 170 35.3
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 3.1e-15 86.7 170 35.3
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 3.1e-15 86.7 170 35.3
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-14 84.3 277 30.7
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-14 84.3 272 30.5
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-14 82.8 280 27.5
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 5.8e-14 82.4 251 31.9
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 7.6e-14 82.0 257 27.6
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 9.9e-14 81.6 274 30.3
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 9.9e-14 81.6 261 27.6
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-13 80.9 264 28.8
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-13 80.9 238 30.3
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.2e-13 80.5 197 31.5
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.9e-13 80.1 277 29.2
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-13 80.1 249 28.9
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.9e-13 80.1 261 28.0
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 3.8e-13 79.7 236 29.7
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.1e-12 78.2 215 30.2
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.1e-12 78.2 195 32.3
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-12 77.8 282 26.6
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 2.4e-12 77.0 273 28.6
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 3.2e-12 76.6 251 28.7
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.4e-12 75.9 285 28.1
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.1e-12 75.5 244 28.7
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.3e-12 75.1 132 37.9
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 9.3e-12 75.1 212 32.1
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-11 74.7 226 27.4
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.2e-11 74.7 130 40.8
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.6e-11 74.3 132 39.4
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-11 73.9 271 27.3
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 2.1e-11 73.9 232 28.4
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-11 73.2 249 28.1
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.6e-11 72.8 287 28.6
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.6e-11 72.8 245 27.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.0e-11 72.4 168 29.8
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 7.8e-11 72.0 109 45.9
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-10 71.6 91 47.3
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.3e-10 71.2 295 23.7
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-10 70.5 260 26.2
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.0e-10 70.1 203 30.0
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.9e-10 69.7 229 30.1
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 5.1e-10 69.3 193 31.1
BolC9t58491H Brassica oleracea HOM05D002743 ORTHO05D002895 8.7e-10 68.6 100 37.0
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 8.7e-10 68.6 102 44.1
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.7e-10 68.6 173 34.1
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.1e-09 68.2 235 27.7
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.5e-09 67.8 207 26.6
C09p56220 Brassica napus HOM05D002609 ORTHO05D002820 1.5e-09 67.8 116 36.2
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-09 67.8 205 29.3
C09p56250 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-09 67.0 116 36.2
BolC9t58494H Brassica oleracea HOM05D002743 ORTHO05D002895 2.5e-09 67.0 116 36.2
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.6e-09 65.9 271 26.9
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.6e-09 65.9 142 31.0
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 9.6e-09 65.1 264 26.1
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-08 64.7 138 34.8
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.3e-08 64.7 243 27.2
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-08 64.7 96 44.8
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-08 64.7 253 29.6
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.6e-08 64.3 274 25.2
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-08 64.3 299 24.1
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 4.8e-08 62.8 250 30.8
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 4.8e-08 62.8 166 29.5
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.1e-08 62.0 162 32.7
Nitab4.5_0000207g0170 Nicotiana tabacum HOM05D001729 ORTHO05D001155 1.1e-07 61.6 132 30.3
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 2.4e-07 60.5 99 35.4
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 4.0e-07 59.7 241 29.5
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-06 55.8 71 46.5
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 9.9e-06 55.1 200 28.0


User provided reference genes

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