Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.0e-108 395.2 200 100.0
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 4.5e-40 168.7 92 92.4
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 4.5e-40 168.7 92 92.4
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.3e-39 167.2 92 91.3
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.7e-39 166.8 92 91.3
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 2.9e-39 166.0 93 93.5
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 6.6e-39 164.9 93 92.5
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.6e-39 164.9 92 91.3
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.1e-37 158.3 92 85.9
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 8.0e-37 157.9 92 84.8
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.8e-36 156.8 91 89.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 8.9e-36 154.5 92 81.5
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.0e-35 153.3 92 81.5
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.6e-35 152.9 115 74.8
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.6e-35 152.9 93 84.9
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.4e-35 152.1 92 80.4
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 4.4e-35 152.1 92 80.4
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.3e-34 150.6 92 81.5
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.2e-34 149.8 92 80.4
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 3.7e-34 149.1 93 81.7
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 3.7e-34 149.1 82 89.0
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.7e-34 149.1 92 79.3
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.3e-34 147.9 93 76.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.3e-34 147.9 93 76.3
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.3e-34 147.9 92 79.3
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.8e-33 146.7 93 80.6
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 2.4e-33 146.4 91 78.0
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 2.4e-33 146.4 92 77.2
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-33 146.0 115 67.0
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.2e-33 146.0 92 77.2
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 4.1e-33 145.6 92 78.3
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 4.1e-33 145.6 93 80.6
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 5.4e-33 145.2 92 79.3
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 7.0e-33 144.8 92 79.3
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 7.0e-33 144.8 95 77.9
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.0e-33 144.8 125 63.2
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 9.2e-33 144.4 93 79.6
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.2e-33 144.4 92 77.2
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.2e-32 144.1 92 76.1
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.2e-32 144.1 92 78.3
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.7e-32 142.9 92 78.3
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.7e-32 142.9 90 77.8
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 3.5e-32 142.5 92 79.3
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.5e-32 142.5 94 76.6
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 3.5e-32 142.5 92 76.1
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.5e-32 142.5 94 73.4
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 3.5e-32 142.5 94 77.7
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 4.6e-32 142.1 125 61.6
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 4.6e-32 142.1 94 76.6
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 7.8e-32 141.4 92 77.2
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 7.8e-32 141.4 102 73.5
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 1.0e-31 141.0 91 75.8
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 1.0e-31 141.0 95 74.7
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 1.0e-31 141.0 94 75.5
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.0e-31 141.0 95 75.8
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.0e-31 141.0 93 77.4
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.3e-31 140.6 94 76.6
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.3e-31 140.6 94 76.6
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.3e-31 140.6 94 76.6
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-31 140.6 94 73.4
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-31 140.6 94 73.4
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 2.3e-31 139.8 92 77.2
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 2.3e-31 139.8 92 77.2
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.0e-31 139.4 92 76.1
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 5.0e-31 138.7 92 75.0
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 5.0e-31 138.7 92 75.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.6e-31 138.3 92 73.9
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.6e-31 138.3 92 73.9
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.6e-31 138.3 92 73.9
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 6.6e-31 138.3 94 74.5
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 6.6e-31 138.3 92 75.0
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 8.6e-31 137.9 93 76.3
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 8.6e-31 137.9 94 76.6
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.1e-30 137.5 92 75.0
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.1e-30 137.5 92 75.0
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.5e-30 137.1 93 76.3
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.5e-30 137.1 94 76.6
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.9e-30 136.7 94 71.3
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.9e-30 136.7 79 82.3
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.5e-30 136.3 91 73.6
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 3.3e-30 136.0 93 71.0
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 4.3e-30 135.6 93 73.1
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 4.3e-30 135.6 93 75.3
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 5.6e-30 135.2 93 74.2
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 5.6e-30 135.2 94 72.3
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 7.3e-30 134.8 94 71.3
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 7.3e-30 134.8 91 71.4
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 9.5e-30 134.4 94 74.5
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 9.5e-30 134.4 95 73.7
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.2e-29 134.0 92 71.7
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 1.6e-29 133.7 94 71.3
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.6e-29 133.7 92 72.8
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.6e-29 133.7 93 73.1
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.1e-29 133.3 116 59.5
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 2.1e-29 133.3 96 71.9
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.1e-29 133.3 91 71.4
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 2.8e-29 132.9 95 71.6
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.8e-29 132.9 90 71.1
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 2.8e-29 132.9 91 67.0
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 3.6e-29 132.5 95 72.6
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.6e-29 132.5 92 69.6
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 3.6e-29 132.5 94 72.3
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.7e-29 132.1 93 73.1
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 4.7e-29 132.1 93 65.6
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 4.7e-29 132.1 91 67.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.7e-29 132.1 86 73.3
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.2e-29 131.7 93 67.7
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 6.2e-29 131.7 94 73.4
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.0e-29 131.3 90 71.1
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 8.0e-29 131.3 91 70.3
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 1.1e-28 131.0 94 72.3
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.4e-28 130.6 93 71.0
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.4e-28 130.6 93 66.7
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.4e-28 130.6 94 72.3
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.8e-28 130.2 93 65.6
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.8e-28 130.2 94 71.3
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 3.1e-28 129.4 94 71.3
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.1e-28 129.4 93 69.9
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 3.1e-28 129.4 94 71.3
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.0e-28 129.0 86 69.8
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 5.2e-28 128.6 90 68.9
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 5.2e-28 128.6 92 67.4
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 6.8e-28 128.3 84 71.4
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-27 127.5 90 67.8
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.5e-27 127.1 93 69.9
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.5e-27 127.1 94 67.0
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.5e-27 127.1 90 70.0
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.0e-27 126.7 80 71.2
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 2.6e-27 126.3 90 66.7
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 3.4e-27 125.9 92 67.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.4e-27 125.6 88 68.2
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.5e-27 124.8 93 68.8
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 9.8e-27 124.4 93 66.7
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 3.7e-26 122.5 93 63.4
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 3.7e-26 122.5 94 62.8
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.4e-26 121.7 91 64.8
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 6.4e-26 121.7 94 61.7
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.1e-25 120.9 94 63.8
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.4e-25 120.6 93 64.5
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 7.0e-25 118.2 93 63.4
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 9.2e-25 117.9 98 60.2
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-24 117.1 91 62.6
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 3.5e-24 115.9 94 59.6
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 4.6e-24 115.5 94 58.5
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 6.0e-24 115.2 82 74.4
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 7.8e-24 114.8 81 72.8
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.7e-23 113.6 102 59.8
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 2.3e-23 113.2 94 63.8
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 5.0e-23 112.1 78 69.2
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 5.0e-23 112.1 84 71.4
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 8.6e-23 111.3 82 69.5
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.9e-22 110.2 91 58.2
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.8e-21 106.3 91 58.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.8e-20 103.6 97 54.6
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 3.1e-20 102.8 79 64.6
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.0e-19 100.1 90 54.4
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.9e-18 96.3 91 52.7
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 3.7e-18 95.9 65 70.8
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 6.4e-18 95.1 81 60.5
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 5.4e-17 92.0 61 68.9
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 7.8e-16 88.2 90 47.8
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 2.5e-14 83.2 72 56.9
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 3.3e-14 82.8 73 53.4
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.3e-14 82.4 68 54.4
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 9.5e-14 81.3 73 47.9
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 3.6e-13 79.3 95 42.1
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 9.9e-11 71.2 52 69.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 9.9e-11 71.2 52 69.2
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.3e-10 70.9 71 42.3
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 4.1e-09 65.9 39 71.8
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.2e-08 64.3 69 46.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.8e-08 61.6 73 38.4
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 6.6e-07 58.5 69 42.0


User provided reference genes

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