Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.5e-136 489.6 251 100.0
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 4.3e-64 248.8 224 61.6
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 4.2e-59 232.3 258 53.1
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 4.2e-59 232.3 258 53.1
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 2.0e-56 223.4 256 51.6
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 2.0e-56 223.4 256 51.6
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 5.5e-51 205.3 292 45.2
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 5.5e-51 205.3 239 51.0
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.2e-50 204.1 280 46.4
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 2.2e-39 166.8 293 42.7
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 5.7e-32 142.1 270 40.0
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 7.5e-32 141.7 291 39.5
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 4.2e-27 125.9 151 51.0
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 2.4e-22 110.2 280 33.9
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 5.4e-22 109.0 284 33.1
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 1.6e-21 107.5 146 44.5
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 1.6e-21 107.5 146 44.5
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 5.9e-21 105.5 278 35.6
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 3.8e-20 102.8 236 36.4
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 5.6e-19 99.0 132 45.5
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 1.2e-18 97.8 83 59.0
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 4.7e-18 95.9 266 31.2
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 4.7e-18 95.9 266 31.2
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 4.1e-14 82.8 141 38.3
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 2.7e-13 80.1 132 37.9
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 3.5e-13 79.7 142 38.0
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 3.5e-13 79.7 142 38.0
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 7.8e-13 78.6 133 34.6
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 1.0e-12 78.2 207 31.4
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.0e-12 78.2 133 38.3
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.0e-12 78.2 172 36.0
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.3e-12 77.8 136 40.4
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 1.7e-12 77.4 207 31.9
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 2.3e-12 77.0 140 35.7
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 3.0e-12 76.6 64 53.1
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 8.6e-12 75.1 185 34.1
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.1e-11 74.7 127 38.6
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 1.5e-11 74.3 138 35.5
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 2.5e-11 73.6 138 42.0
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 2.5e-11 73.6 174 32.2
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 5.6e-11 72.4 86 38.4
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 5.6e-11 72.4 86 38.4
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 1.2e-10 71.2 74 45.9
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.6e-10 70.9 154 32.5
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 3.6e-10 69.7 195 30.8
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 4.7e-10 69.3 128 35.2
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 8.0e-10 68.6 146 31.5
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 8.0e-10 68.6 209 30.1
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.0e-09 68.2 90 38.9
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 1.4e-09 67.8 72 38.9
Gohir.A07G170878 Gossypium hirsutum HOM05D019103 ORTHO05D010111 3.1e-09 66.6 45 62.2
Gohir.D07G177633 Gossypium hirsutum HOM05D019103 ORTHO05D010111 3.1e-09 66.6 45 62.2
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 4.0e-09 66.2 74 44.6
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 6.8e-09 65.5 135 30.4
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 6.8e-09 65.5 125 36.0
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 8.9e-09 65.1 98 35.7
TWI09G1032 Tripterygium wilfordii HOM05D057879 ORTHO05D010111 1.2e-08 64.7 143 34.3
Gorai.001G198600 Gossypium raimondii HOM05D019103 ORTHO05D010111 2.0e-08 63.9 97 39.2
Migut.H02203 Erythranthe guttata HOM05D008569 ORTHO05D010111 3.4e-08 63.2 50 52.0
Oeu031633.1 Olea europaea HOM05D008569 ORTHO05D010111 3.4e-08 63.2 57 45.6
unitig_736.g22730 Utricularia gibba HOM05D008569 ORTHO05D001526 9.8e-08 61.6 78 38.5
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 9.8e-08 61.6 54 40.7
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 1.3e-07 61.2 79 31.6
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 1.7e-07 60.8 130 35.4
SGA_v2.0_scaffold1068G53826 Striga asiatica HOM05D000174 ORTHO05D010111 1.7e-07 60.8 40 57.5
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 2.2e-07 60.5 123 31.7
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 2.9e-07 60.1 64 40.6
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 2.9e-07 60.1 76 39.5
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 3.7e-07 59.7 60 41.7
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.7e-07 59.7 141 27.0
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.7e-07 59.7 60 41.7
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.7e-07 59.7 60 41.7
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.7e-07 59.7 60 41.7
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 4.9e-07 59.3 60 51.7
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 4.9e-07 59.3 94 41.5
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 4.9e-07 59.3 82 37.8
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 4.9e-07 59.3 82 37.8
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 4.9e-07 59.3 59 45.8
Actinidia20568 Actinidia chinensis HOM05D000174 ORTHO05D001526 6.4e-07 58.9 100 35.0
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 6.4e-07 58.9 130 32.3
TWI73G0977 Tripterygium wilfordii HOM05D057879 ORTHO05D010111 6.4e-07 58.9 148 35.8
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 6.4e-07 58.9 40 52.5
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 8.3e-07 58.5 77 37.7
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 8.3e-07 58.5 77 37.7
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 8.3e-07 58.5 97 32.0
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 8.3e-07 58.5 90 34.4
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 1.1e-06 58.2 65 46.2
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 1.1e-06 58.2 40 50.0
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 1.4e-06 57.8 139 28.8
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.9e-06 57.4 41 51.2
PSO478G0578 Papaver somniferum HOM05D000174 ORTHO05D001526 1.9e-06 57.4 99 34.3
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 2.4e-06 57.0 57 43.9
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 2.4e-06 57.0 50 48.0
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 2.4e-06 57.0 105 34.3
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 2.4e-06 57.0 65 44.6
Aqoxy6G01686 Aquilegia oxysepala HOM05D000174 ORTHO05D001526 3.2e-06 56.6 102 31.4
EL10Ac9g21244 Beta vulgaris HOM05D000174 ORTHO05D001526 3.2e-06 56.6 36 55.6
Rhsim08G0027800 Rhododendron simsii HOM05D035560 ORTHO05D026372 3.2e-06 56.6 119 33.6
TWI75G1586 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 3.2e-06 56.6 84 33.3
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 4.1e-06 56.2 38 52.6
Carub.0003s3112 Capsella rubella HOM05D000174 ORTHO05D001526 4.1e-06 56.2 130 31.5
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 4.1e-06 56.2 106 32.1
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 40.6
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 40.6
Psat2g001240 Pisum sativum HOM05D000174 ORTHO05D001526 4.1e-06 56.2 43 46.5
Psat2g023640 Pisum sativum HOM05D000174 ORTHO05D001526 4.1e-06 56.2 43 46.5
TWI79G0030 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 4.1e-06 56.2 84 35.7
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 5.4e-06 55.8 170 27.6
Lj9P406T21 Lonicera japonica HOM05D000174 ORTHO05D001526 5.4e-06 55.8 88 34.1
Manes.09G006400 Manihot esculenta HOM05D000174 ORTHO05D001526 5.4e-06 55.8 59 39.0
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 7.0e-06 55.5 66 36.4
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 7.0e-06 55.5 36 52.8
HPP92_014994 Vanilla planifolia HOM05D000174 ORTHO05D001526 7.0e-06 55.5 70 38.6
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 9.2e-06 55.1 70 41.4
AUR62033207 Chenopodium quinoa HOM05D000174 ORTHO05D001526 9.2e-06 55.1 39 51.3
AUR62033209 Chenopodium quinoa HOM05D000174 ORTHO05D001526 9.2e-06 55.1 39 51.3
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 9.2e-06 55.1 55 38.2
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 9.2e-06 55.1 35 54.3
TAR625G1147 Trochodendron aralioides HOM05D000174 ORTHO05D001526 9.2e-06 55.1 84 34.5


User provided reference genes

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