Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 1.8e-173 612.5 299 100.0
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 3.2e-167 591.7 295 96.9
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 5.5e-167 590.9 299 96.0
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 7.2e-167 590.5 295 96.6
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 9.5e-167 590.1 299 94.6
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 2.1e-166 589.0 295 96.3
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 3.6e-166 588.2 298 95.6
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 6.1e-166 587.4 298 95.0
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 1.4e-165 586.3 295 96.3
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 1.4e-165 586.3 295 96.3
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 2.0e-161 572.4 320 88.8
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 3.5e-161 571.6 299 90.6
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 4.6e-153 544.7 299 86.6
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 1.8e-149 532.7 298 84.6
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 6.2e-142 507.7 299 79.9
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 5.2e-141 504.6 297 78.8
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 8.9e-141 503.8 297 80.1
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.6e-140 502.3 298 79.2
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 1.3e-139 500.0 298 78.5
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 4.9e-139 498.0 298 78.2
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 6.4e-139 497.7 298 78.2
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 1.1e-138 496.9 299 79.3
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 1.4e-138 496.5 298 78.5
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 1.9e-138 496.1 295 79.3
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 1.9e-138 496.1 296 76.0
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 3.2e-138 495.4 298 77.9
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 3.2e-138 495.4 294 77.2
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 7.1e-138 494.2 298 76.2
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 9.2e-138 493.8 298 77.5
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.2e-137 493.4 298 78.5
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 1.2e-137 493.4 298 78.2
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.7e-137 492.3 294 76.9
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 3.5e-137 491.9 294 76.9
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 3.5e-137 491.9 297 77.4
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 6.0e-137 491.1 298 77.2
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 7.8e-137 490.7 298 77.2
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 7.8e-137 490.7 294 76.9
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.3e-136 489.2 297 78.5
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 2.3e-136 489.2 300 76.7
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 8.6e-136 487.3 297 76.4
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 8.6e-136 487.3 298 76.5
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.5e-135 486.5 289 78.9
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 1.9e-135 486.1 298 77.2
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.5e-135 485.7 299 75.9
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.5e-135 485.7 299 75.9
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 3.3e-135 485.3 299 75.9
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 7.3e-135 484.2 295 76.6
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 7.3e-135 484.2 299 75.6
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 7.3e-135 484.2 298 76.8
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.2e-134 483.4 287 77.4
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 1.2e-134 483.4 312 74.0
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 1.2e-134 483.4 298 76.2
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.6e-134 483.0 299 75.6
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 2.1e-134 482.6 319 72.4
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 3.6e-134 481.9 297 77.1
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 4.7e-134 481.5 298 75.2
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 4.7e-134 481.5 298 76.5
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 8.1e-134 480.7 298 74.8
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 1.1e-133 480.3 301 75.1
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 3.1e-133 478.8 298 75.5
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 4.0e-133 478.4 296 77.0
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 3.4e-132 475.3 297 75.4
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 4.4e-132 474.9 302 74.2
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 5.8e-132 474.6 298 75.2
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 2.9e-131 472.2 298 74.8
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 8.4e-131 470.7 314 71.0
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 9.2e-130 467.2 302 73.2
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 9.2e-130 467.2 299 73.6
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 2.7e-129 465.7 296 74.3
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 1.1e-127 460.3 271 77.5
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 1.1e-127 460.3 317 71.9
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.5e-127 459.9 295 72.9
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 1.6e-126 456.4 346 64.7
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 2.8e-126 455.7 295 71.9
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 2.8e-126 455.7 294 71.1
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 4.7e-126 454.9 299 70.2
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 6.2e-126 454.5 294 71.4
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 1.4e-125 453.4 298 70.5
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 9.0e-125 450.7 301 72.1
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 9.0e-125 450.7 294 71.8
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.5e-124 449.9 297 69.7
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 4.4e-124 448.4 337 67.4
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 1.4e-122 443.4 294 70.1
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 4.2e-122 441.8 260 78.5
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 4.6e-121 438.3 266 74.8
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 6.0e-121 438.0 293 69.6
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 1.3e-120 436.8 297 67.7
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 3.9e-120 435.3 298 69.1
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 3.9e-120 435.3 299 67.2
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 8.1e-118 427.6 289 69.2
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.0e-117 425.2 298 68.8
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 1.9e-114 416.4 299 69.2
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 2.4e-109 399.4 292 64.0
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 6.2e-102 374.8 222 77.0
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 9.3e-98 360.9 290 57.9
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 4.6e-97 358.6 186 94.1
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 1.3e-96 357.1 284 58.5
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 3.3e-95 352.4 198 82.3
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 5.3e-93 345.1 293 58.4
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 2.0e-92 343.2 284 57.7
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 9.4e-90 334.3 204 75.0
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 1.2e-81 307.4 199 71.4
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.7e-70 270.4 166 75.3
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 8.2e-70 268.1 258 50.4
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.2e-57 227.6 149 67.1
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 6.8e-56 221.9 149 70.5
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 8.0e-49 198.4 147 68.0
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 3.4e-47 193.0 142 68.3
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 1.6e-36 157.5 109 72.5
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 3.3e-34 149.8 100 74.0
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 3.4e-31 139.8 117 61.5
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 1.9e-29 134.0 328 30.2
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 4.3e-26 122.9 71 83.1
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 1.8e-24 117.5 299 27.1
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 3.1e-24 116.7 76 76.3
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 8.9e-24 115.2 325 27.4
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.3e-22 111.3 77 71.4
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 1.9e-21 107.5 73 67.1
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 1.3e-06 58.2 41 61.0


User provided reference genes

Program Settings