Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023907m.g Eutrema salsugineum HOM05D000162 ORTHO05D021394 4.1e-28 130.2 65 100.0
Thhalv10023918m.g Eutrema salsugineum HOM05D000162 ORTHO05D020197 3.4e-22 110.5 63 82.5
AL2G12890 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.9e-21 106.7 65 78.5
AL2G12180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.5e-19 100.5 65 73.8
Thhalv10024048m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.8e-18 97.1 64 70.3
BolC4t24490H Brassica oleracea HOM05D000162 ORTHO05D000090 8.6e-18 95.9 65 73.8
C04p29560 Brassica napus HOM05D000162 ORTHO05D021394 1.1e-17 95.5 65 72.3
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 1.1e-17 95.5 67 71.6
AT1G64100 Arabidopsis thaliana HOM05D010613 ORTHO05D014059 4.3e-17 93.6 65 66.2
C04p29600 Brassica napus HOM05D000162 ORTHO05D021394 7.3e-17 92.8 65 69.2
BcaC04g22688 Brassica carinata HOM05D000162 ORTHO05D000090 4.7e-16 90.1 65 69.2
C09p16530 Brassica napus HOM05D000162 ORTHO05D000090 4.7e-16 90.1 65 69.2
BolC9t54562H Brassica oleracea HOM05D000162 ORTHO05D000090 4.7e-16 90.1 65 69.2
A09p13820 Brassica napus HOM05D000162 ORTHO05D000090 6.1e-16 89.7 65 67.7
BraA09t37034Z Brassica rapa HOM05D000162 ORTHO05D000090 6.1e-16 89.7 65 67.7
AL2G12900 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.4e-15 88.6 57 75.4
Carub.0002s0125 Capsella rubella HOM05D000162 ORTHO05D000090 2.0e-11 74.7 64 60.9
CARHR047600 Cardamine hirsuta HOM05D000162 ORTHO05D000090 3.0e-10 70.9 49 71.4
CARHR049170 Cardamine hirsuta HOM05D000162 ORTHO05D000090 9.5e-09 65.9 65 52.3
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.5e-09 65.9 65 52.3
Aa31LG11G12980 Aethionema arabicum HOM05D000162 ORTHO05D000090 1.6e-08 65.1 64 48.4
A10p22570 Brassica napus HOM05D000162 ORTHO05D000090 1.6e-08 65.1 65 47.7
BraA10t44319Z Brassica rapa HOM05D000162 ORTHO05D000090 1.6e-08 65.1 65 47.7
Carub.0002s0230 Capsella rubella HOM05D000162 ORTHO05D000090 3.6e-08 63.9 65 49.2
Thhalv10023942m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.7e-08 63.5 65 50.8
AT1G62680 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 8.0e-08 62.8 64 48.4
BcaC04g22436 Brassica carinata HOM05D000162 ORTHO05D000090 1.1e-07 62.4 62 51.6
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 1.1e-07 62.4 64 45.3
A09p63470 Brassica napus HOM05D000162 ORTHO05D000090 1.1e-07 62.4 64 45.3
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 1.1e-07 62.4 64 45.3
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 1.1e-07 62.4 64 45.3
BraA09t41697Z Brassica rapa HOM05D000162 ORTHO05D000090 1.1e-07 62.4 64 45.3
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 1.4e-07 62.0 65 49.2
AL2G13120 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.8e-07 61.6 64 46.9
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 1.8e-07 61.6 64 43.8
A09p66920 Brassica napus HOM05D000162 ORTHO05D000090 1.8e-07 61.6 57 50.9
BraA09t42027Z Brassica rapa HOM05D000162 ORTHO05D000090 1.8e-07 61.6 57 50.9
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 2.3e-07 61.2 64 43.8
AL2G10960 Arabidopsis lyrata HOM05D010613 ORTHO05D000090 4.0e-07 60.5 42 66.7
AL2G11610 Arabidopsis lyrata HOM05D000162 ORTHO05D021394 4.0e-07 60.5 38 68.4
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 64 43.8
C08p51150 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 57 50.9
C09p19330 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 58 53.4
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 64 43.8
BolC8t52641H Brassica oleracea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 57 50.9
BolC9t54844H Brassica oleracea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 58 53.4
Carub.0002s0191 Capsella rubella HOM05D000162 ORTHO05D000090 4.0e-07 60.5 64 46.9
CARHR055270 Cardamine hirsuta HOM05D000162 ORTHO05D000090 4.0e-07 60.5 65 49.2
CARHR046360 Cardamine hirsuta HOM05D000162 ORTHO05D000090 5.2e-07 60.1 65 47.7
BcaB08g36832 Brassica carinata HOM05D000162 ORTHO05D000090 6.8e-07 59.7 57 49.1
Gohir.D10G136600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 6.8e-07 59.7 55 41.8
Gorai.011G151500 Gossypium raimondii HOM05D000162 ORTHO05D000090 6.8e-07 59.7 55 41.8
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 8.9e-07 59.3 64 42.2
CARHR046840 Cardamine hirsuta HOM05D000162 ORTHO05D000090 8.9e-07 59.3 39 66.7
CARHR048840 Cardamine hirsuta HOM05D000162 ORTHO05D000090 8.9e-07 59.3 53 52.8
Carub.0002s0210 Capsella rubella HOM05D000162 ORTHO05D000090 1.2e-06 58.9 65 47.7
AL2G10190 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 65 47.7
THA.LOC104806886 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.5e-06 58.5 61 49.2
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 2.0e-06 58.2 61 49.2
Aa31LG5G12130 Aethionema arabicum HOM05D000162 ORTHO05D000090 2.6e-06 57.8 65 46.2
A09p16080 Brassica napus HOM05D000162 ORTHO05D000090 4.4e-06 57.0 58 51.7
BraA09t37245Z Brassica rapa HOM05D000162 ORTHO05D000090 4.4e-06 57.0 58 51.7
TWI36G0958 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 4.4e-06 57.0 55 47.3
Gohir.A04G043300 Gossypium hirsutum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 55 41.8
THA.LOC104806884 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 5.8e-06 56.6 56 51.8
THA.LOC104806963 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 5.8e-06 56.6 56 50.0
AT1G06580 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.5e-06 56.2 54 46.3
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 7.5e-06 56.2 64 40.6
AL6G27650 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.8e-06 55.8 57 45.6
AT5G16640 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 9.8e-06 55.8 57 45.6
BcaB07g31581 Brassica carinata HOM05D000162 ORTHO05D000090 9.8e-06 55.8 64 48.4
THA.LOC104803570 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 9.8e-06 55.8 56 51.8


User provided reference genes

Program Settings