Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 3.1e-204 714.9 363 100.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 4.9e-202 707.6 363 98.9
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 4.9e-202 707.6 363 98.9
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 4.9e-202 707.6 363 98.9
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 7.1e-201 703.7 363 98.1
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 7.1e-201 703.7 363 98.1
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.5e-198 695.3 364 97.5
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.7e-165 586.3 349 87.4
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.1e-164 583.6 366 85.2
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 4.5e-163 578.2 366 84.7
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 6.5e-162 574.3 355 85.1
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 4.2e-161 571.6 353 86.1
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 5.5e-161 571.2 350 86.0
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 2.4e-156 555.8 352 84.1
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 3.1e-156 555.4 350 83.1
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 5.0e-154 548.1 349 83.7
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 3.1e-148 528.9 344 83.1
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.0e-148 527.7 344 82.0
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.0e-146 523.9 365 77.3
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.7e-133 479.9 335 78.2
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.2e-132 475.7 279 86.7
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.2e-132 475.7 279 86.7
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 5.0e-130 468.4 330 76.7
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 5.0e-130 468.4 330 76.7
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 6.2e-128 461.5 338 74.6
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 2.6e-126 456.1 279 83.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.8e-126 454.1 312 78.2
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 1.3e-122 443.7 282 83.0
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 3.4e-118 429.1 259 86.1
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 2.9e-117 426.0 216 99.1
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 6.6e-114 414.8 312 73.7
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.1e-112 409.8 256 84.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.9e-108 396.7 291 72.5
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 4.9e-101 372.1 238 82.8
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 8.1e-96 354.8 257 73.9
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.4e-95 353.2 228 82.0
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 4.5e-94 349.0 256 73.0
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 5.4e-92 342.0 229 79.9
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.5e-91 339.3 210 83.8
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 4.6e-91 339.0 209 83.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 8.7e-90 334.7 206 83.0
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 4.3e-89 332.4 361 58.4
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.8e-82 310.5 226 74.3
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 1.5e-81 307.4 205 79.5
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 7.1e-76 288.5 193 78.2
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 1.1e-73 281.2 214 70.1
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 1.1e-73 281.2 214 70.1
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 1.1e-73 281.2 214 70.1
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 3.2e-68 263.1 216 66.2
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 6.3e-64 248.8 148 88.5
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 1.8e-63 247.3 169 76.9
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 1.4e-60 237.7 138 92.8
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 5.5e-60 235.7 162 76.5
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 2.7e-59 233.4 200 68.0
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 5.7e-57 225.7 262 51.5
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 5.3e-55 219.2 240 52.5
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 7.0e-55 218.8 240 52.9
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 2.2e-53 213.8 178 70.8
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.6e-51 206.5 174 66.1
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.0e-50 204.9 141 78.0
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.6e-49 200.3 173 62.4
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.3e-49 199.9 137 78.1
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 2.2e-48 197.2 154 71.4
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 2.2e-48 197.2 154 71.4
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 2.2e-48 197.2 154 71.4
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 2.2e-48 197.2 154 71.4
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.9e-45 186.8 167 65.9
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.5e-44 184.5 150 68.7
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 3.2e-44 183.3 134 70.1
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-40 170.6 138 66.7
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.9e-37 160.2 127 66.1
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-35 154.5 137 60.6
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 2.1e-35 154.1 80 96.2
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 5.2e-34 149.4 91 80.2
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.2e-33 148.3 88 80.7
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 1.3e-32 144.8 93 82.8
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 9.1e-31 138.7 86 84.9
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 5.9e-30 136.0 110 61.8
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 4.2e-28 129.8 100 66.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-23 115.2 110 61.8
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-23 114.4 183 42.1
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.0e-23 112.5 90 71.1
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 2.9e-21 107.1 122 56.6
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.6e-20 102.8 62 80.6
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-18 98.2 67 77.6
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 3.1e-18 97.1 50 96.0
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 9.8e-17 92.0 100 56.0
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 2.0e-14 84.3 58 79.3
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 2.3e-13 80.9 105 45.7
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 6.6e-13 79.3 113 46.0
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.6e-13 79.0 62 62.9
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 4.3e-12 76.6 50 70.0
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.5e-09 68.2 35 88.6
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.9e-08 63.2 37 86.5
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 2.4e-07 60.8 37 78.4
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.7e-06 57.4 50 74.0


User provided reference genes

Program Settings